PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545300.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 405aa    MW: 44343.5 Da    PI: 6.6705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545300.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000816486123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C  Cgk F++   L  H r H
  XP_010545300.1 64 HICCECGKAFKSGKALGGHKRIH 86
                    68*****************9998 PP
2zf-C2H215.26.2e-05126146323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C  Cgk F++   L  H+r H
  XP_010545300.1 126 CCVCGKKFTSMKALYGHMRFH 146
                     *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.4E-96386No hitNo description
PfamPF139122.4E-76386IPR007087Zinc finger, C2H2
SMARTSM003550.246486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1366491IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-46586IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576672.4E-9119146No hitNo description
PROSITE profilePS501579.951124146IPR007087Zinc finger, C2H2
SMARTSM003550.1124146IPR015880Zinc finger, C2H2-like
PfamPF138940.0013125146No hitNo description
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-7278302No hitNo description
SMARTSM003550.38280302IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-11280304IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162280307IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
SuperFamilySSF576671.77E-7332359No hitNo description
PROSITE profilePS501579.037337359IPR007087Zinc finger, C2H2
SMARTSM003550.16337359IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-11337360IPR007087Zinc finger, C2H2
PROSITE patternPS000280339359IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMDGERELYE TLEFSAISRR EESEEEGDSD DGAGAKTIGE EPGEDGDDDH GATKMVEEAE  60
GQRHICCECG KAFKSGKALG GHKRIHGYET RKSREKPPRM IIPHGAMNLN PDLVDGFVGD  120
EVEVACCVCG KKFTSMKALY GHMRFHPDRG WRGVQPPRPG SSSSTLSVDH DREFSDEVTD  180
LKESLKGWSI TGKRGRNSSL KIEANPEDNN LQEAVNDLLM LANAETHLQD PGKLDKKIRK  240
KKKKKRRLSD MGKASNQGEL DADINSNNPP LMAGVYKKKH ICVTCNKSFP SYQALGGHRA  300
SHNKVKRVGA DALLASEATG LASAQGSNTS VSSSGDHQCN ICRKRFPTGQ ALGGHKRCHW  360
MGPAETAASC SSQATELTTQ EMKLQRTVLN IDLNEPPPDE EEETV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235247KKIRKKKKKKRRL
2238246RKKKKKKRR
3240246KKKKKRR
4240247KKKKKRRL
5241246KKKKRR
6242246KKKRR
7242247KKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010545300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545300.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLR0EWN01e-95R0EWN0_9BRAS; Uncharacterized protein
STRINGXP_010545300.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-89C2H2 family protein