PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544759.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 305aa    MW: 34268 Da    PI: 9.8797
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544759.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-1370114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W+++E++++++a +++  + Wk+I + +g  ++  q++s+ qky
   XP_010544759.1  70 RESWSEQEHDRFLEALQLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 114
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.35E-1564120IPR009057Homeodomain-like
PROSITE profilePS5129414.90965119IPR017930Myb domain
TIGRFAMsTIGR015571.1E-1768117IPR006447Myb domain, plants
SMARTSM007175.0E-1069117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-569110IPR009057Homeodomain-like
PfamPF002499.8E-1170114IPR001005SANT/Myb domain
CDDcd001671.71E-772115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVSVAPNSVR EHCLFDPIMK SGLSSRTPTA ETAAKAPGDC SPAAGGKNSL PFPEDSSKRT  60
RKLYTMTKSR ESWSEQEHDR FLEALQLFDR DWKKIEAFVG SKSVIQIRSH AQKYFLKVQK  120
NGTGEHVPPP RPKRKATRPY PQKAPKNVAA VSQPEGRFQA SAGSVELMES NKRMPLWIQN  180
SVAVVNTSPM ANGILDKERL YAPMVAKDSC YSSSNESAQK DRRFCEPNDQ LDKGRLIRVM  240
PDFSQVYSFL GSVFDPNATD HLQRLKQMDP INLETALLLM RNLNVNLNSS EFEKYQSGCH  300
SMVLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544759.10.0PREDICTED: protein REVEILLE 3-like isoform X3
SwissprotQ6R0H08e-88RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A061DUW21e-111A0A061DUW2_THECC; Homeodomain-like superfamily protein
STRINGXP_010544757.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.13e-68MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]