PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010544757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 328aa MW: 36873.7 Da PI: 9.7929 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.5e-13 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W+++E++++++a +++ + Wk+I + +g ++ q++s+ qky XP_010544757.1 70 RESWSEQEHDRFLEALQLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 114 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-15 | 64 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.909 | 65 | 119 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-17 | 68 | 117 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.0E-10 | 69 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 69 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-10 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.00E-7 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MVSVAPNSVR EHCLFDPIMK SGLSSRTPTA ETAAKAPGDC SPAAGGKNSL PFPEDSSKRT 60 RKLYTMTKSR ESWSEQEHDR FLEALQLFDR DWKKIEAFVG SKSVIQIRSH AQKYFLKVQK 120 NGTGEHVPPP RPKRKATRPY PQKAPKNVAA VSQPEGRFQA SAGSVELMES NKRMPLWIQN 180 SVAVVNTSPM ANGILDKERL YAPMVAKDSC YSSSNESAQK DRRFCEPNDQ LDKGRLIRVM 240 PDFSQVYSFL GSVFDPNATD HLQRLKQMDP INLETALLLM RNLNVNLNSS EFEKYWLSFY 300 GSKVKRSNSG PEYDDMQTGD RDRAVASA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010544757.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544757.1 | 0.0 | PREDICTED: protein REVEILLE 3-like isoform X1 | ||||
Swissprot | Q6R0H0 | 9e-88 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | A0A061DUW2 | 1e-115 | A0A061DUW2_THECC; Homeodomain-like superfamily protein | ||||
STRING | XP_010544757.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01520.1 | 4e-68 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|