PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544578.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 299aa    MW: 32711.5 Da    PI: 9.314
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-17147201256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee F++ ++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010544578.1 147 RKKLRLSKEQSLVLEETFKEYSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 201
                     788899***********************************************98 PP
2HD-ZIP_I/II123.97.4e-40147236191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+ +LEe+F+e ++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+kev+eLr +l
  XP_010544578.1 147 RKKLRLSKEQSLVLEETFKEYSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTSENRRLQKEVSELR-AL 236
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.0E-271116IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.609.3E-19128201IPR009057Homeodomain-like
SuperFamilySSF466891.71E-18133204IPR009057Homeodomain-like
PROSITE profilePS5007116.989143203IPR001356Homeobox domain
SMARTSM003896.1E-15145207IPR001356Homeobox domain
PfamPF000463.4E-15147201IPR001356Homeobox domain
CDDcd000862.47E-14147204No hitNo description
PROSITE patternPS000270178201IPR017970Homeobox, conserved site
PfamPF021835.0E-11203237IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.6E-26203246IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MAGRDDGLSL GLGLSLSSGF PQQKEPSLSL KLMPMASSSP HMQSHHSHSQ KIHNSWTHLF  60
QSSDRVLEAR SSFPRGIDVN RAPSASATAG VGDVEEDGGA SSPNSTVSSS SGKRSDKPGA  120
ADDIDAERAS CSRGSDDEDG GNGDGSRKKL RLSKEQSLVL EETFKEYSTL NPKQKLALAK  180
QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCENLT SENRRLQKEV SELRALKLSP  240
HLYMHMNPPT TLTMCPSCER VSSSSPSSAR DVGPSPQRPN PANPWASLRL HQRPAAGSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151SRKKLRL
2195203RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544578.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544578.10.0PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466021e-119HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A067HCG81e-127A0A067HCG8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NNU81e-127A0A2H5NNU8_CITUN; Uncharacterized protein
TrEMBLV4U8Y01e-127V4U8Y0_9ROSI; Uncharacterized protein
STRINGXP_010544578.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.11e-80homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]