PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544462.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family RAV
Protein Properties Length: 351aa    MW: 40205.1 Da    PI: 8.1091
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.52.1e-104793254
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                    +ykGV +   +  W A+I+       ++r++lg+f ta eAa a++ a  kl+
  XP_010544462.1 47 KYKGVVQQQ-NRHWGAQIYAD-----HRRIWLGTFKTAAEAAMAYDSASIKLR 93
                    8****8766.566****9993.....4*********************99998 PP
2B392.82.4e-29169257184
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                     f+k+ltpsdv+k++rlv+pkk+a ++     +++++e++ l+++d++ r+W+++++y+++s+++v+t+GW++Fvk+++Lke+D++vF+ 
  XP_010544462.1 169 FQKELTPSDVGKLNRLVIPKKYAVKYlpyifSEDEREDVGLVFYDREMRQWKFRYCYWRSSQSFVFTRGWSGFVKEKNLKEKDVIVFYT 257
                     99*****************************888999**************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.14E-2146106No hitNo description
PfamPF008475.4E-64793IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-1347105IPR016177DNA-binding domain
SMARTSM003804.2E-1447110IPR001471AP2/ERF domain
PROSITE profilePS5103216.52947104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1547104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-33165257IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-27167258IPR015300DNA-binding pseudobarrel domain
CDDcd100177.79E-28168256No hitNo description
SMARTSM010196.2E-18169265IPR003340B3 DNA binding domain
PROSITE profilePS5086312.788169281IPR003340B3 DNA binding domain
PfamPF023621.2E-26169259IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MNIDDTLSTV SSSSVKKTVT SGSKRKLHEE EAALASTASV ALTSTAKYKG VVQQQNRHWG  60
AQIYADHRRI WLGTFKTAAE AAMAYDSASI KLRSSDGNPH RNFPWTDITI HEPDFQECYT  120
AEAVLNMIRD GSYQHKFRDF LRIRSQIVAN INVTGSKETN KCFACTQLFQ KELTPSDVGK  180
LNRLVIPKKY AVKYLPYIFS EDEREDVGLV FYDREMRQWK FRYCYWRSSQ SFVFTRGWSG  240
FVKEKNLKEK DVIVFYTCDV PSNANTSSEG QNMKFLMIDV HYYEENAFVV TDEATTTTRC  300
DNSGADMNSG NVFRARLDEE MKTSRDKTGS ESGNNDMEEN KGFRLFGVRI Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-2716825513100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544462.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6881e-159RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A178WMW51e-157A0A178WMW5_ARATH; Uncharacterized protein
STRINGXP_010544462.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-148RAV family protein