PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544434.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 162aa    MW: 17570.9 Da    PI: 4.9775
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.53.3e-0840682755
             AP2 27 krkrfslgkfgtaeeAakaaiaarkkleg 55
                    k+ r++lg+f  +e+Aaka++ a+++l+g
  XP_010544434.1 40 KKNRIWLGSFPVPEMAAKAYDVAALCLKG 68
                    569************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.9741376IPR001471AP2/ERF domain
SMARTSM003801.8E-91582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-163777IPR001471AP2/ERF domain
CDDcd000182.20E-173877No hitNo description
SuperFamilySSF541716.54E-113978IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MDQPPSKQPP PVAERGIRCT AVYGNGGGEN GYLKSESPGK KNRIWLGSFP VPEMAAKAYD  60
VAALCLKGRK AQLNFPDEVD NLPRPSTCTA RDIQTAAAKA AHAVVKTRTK TDHEEVVVPD  120
INSDNFWENI DLPELMLTGG WSSPFPVGDA TWLVDGEFMA CL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544434.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544434.26e-76PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI27e-45ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLE4MX591e-45E4MX59_EUTHA; mRNA, clone: RTFL01-20-O04
TrEMBLV4LAG67e-46V4LAG6_EUTSA; Uncharacterized protein
STRINGXP_010544434.11e-118(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]