PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544244.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 276aa    MW: 28545.4 Da    PI: 6.5088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.2e-19210245235
            GATA   2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     +  nC+t++Tp+WR+gp g+k+LCnaCG++yrk+++
  XP_010544244.1 210 TnfNCNTSDTPMWRKGPLGPKSLCNACGIKYRKEEE 245
                     5559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.9E-13203256IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-12207250No hitNo description
PfamPF003201.3E-16209245IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.0E-14212248IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.57E-11212242No hitNo description
PROSITE profilePS5011411.49213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEDLDLTLKL GLPMSNQIVD SDKGPTIGTG SNGDATTKVD INLMVSDYIM QKFSGAGKHF  60
TGGSSGSGEY FPGGSSGGYF AGGSSGSGGY FPGGFSGGYF SGGCFGGHFA GGSSGSGEYF  120
PGGCSGGYFS GGSSGSGIYL PDGISGDMNP RRDPPAPAAV PVIGNEFVLI DVPERRAQRE  180
RALANANANA NANANAGYNI KASSLVKRCT NFNCNTSDTP MWRKGPLGPK SLCNACGIKY  240
RKEEERRKAR AEAANNNREA DEPGTQNNPI YINFAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544243.10.0PREDICTED: glycine, alanine and asparagine-rich protein isoform X1
STRINGXP_010544243.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-19GATA transcription factor 29