PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544197.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 306aa    MW: 33413.8 Da    PI: 5.1496
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544197.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.6e-20137186255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_010544197.1 137 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 186
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.41E-34136194No hitNo description
SMARTSM003809.0E-37137200IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23137194IPR016177DNA-binding domain
PROSITE profilePS5103222.906137194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-31137194IPR001471AP2/ERF domain
PfamPF008471.3E-14138186IPR001471AP2/ERF domain
PRINTSPR003672.7E-11138149IPR001471AP2/ERF domain
PRINTSPR003672.7E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009415Biological Processresponse to water
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEALQPFYRS ASAFAPPPAA PSDSAFASAS ASNDPPVSYS SSSSYYPPCN YQTEPGFYPD  60
LSSGSMTHIF SNGSDLHQPG YQIPPQTHFD YTSDFTYSHP EHSNSMLNFI DPSSVMSNQP  120
GYVPVPVPEP GAKPAKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAALAYDRA  180
AYKLRGDSAR LNFRPRPAAD YSEYAALHAS VDAKLEAILS EPKNQPGNSE SQPTRKRGSS  240
TSSAVGECSP AVVPPRMNSG SGESDGSGES SPVSELMVAE PPMPWNENFM LGRCPSYEID  300
WDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19136196162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-19135196365ATERF1
3gcc_A2e-19135196365ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00182DAPTransfer from AT1G36060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544197.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544197.20.0PREDICTED: ethylene-responsive transcription factor ERF055
SwissprotQ9SKW52e-94ERF55_ARATH; Ethylene-responsive transcription factor ERF055
TrEMBLA0A178W0X82e-91A0A178W0X8_ARATH; Uncharacterized protein
STRINGXP_010544197.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151241518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G36060.13e-69ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]