PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544063.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 609aa MW: 63487.3 Da PI: 10.0775

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.4e-08	158	202	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ avk+ G g+W+ I r Rt+ q+ rw XP_010544063.1 158 RKKWSPGEDAELIAAVKRCGEGNWAHILRGEFkGERTASQLSQRW 202 789************************996555689999999999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.562	153	209	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-11	154	207	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.36E-11	155	208	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-7	157	208	IPR001005	SANT/Myb domain
Pfam	PF00249	4.4E-6	158	202	IPR001005	SANT/Myb domain
CDD	cd11660	4.06E-13	159	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MADQSDQGKK RFITEGDIAS LLQRYDATTA LKLLQEVAYF AGPKIDWNAL VKKTSTGITN 60 AREYQMLWRH LAYRDSLTPV EDDAQPLDDD SDLDCELEAS PHVSNEASME ANAHVKVMAA 120 SYMPAESNIP DNSTKAPSTE GLNGNGSASG SVASRKKRKK WSPGEDAELI AAVKRCGEGN 180 WAHILRGEFK GERTASQLSQ RWALIRKRCD TSNSAPNQSG LQRTEAQMAA NHALSLAVGN 240 RAPAKKLTVG VSPMAPSGST AEVPAVGTSS SQAQPQPNVV QALPRTAASV PAVKYRVAAV 300 KKAPNSTSRT DLMVTANSVA AAACMAGPST TASVQAEPEK NAAEVVSKAE PGKPISATCM 360 PRPSGGLSVP KTEPGKSVTP ATTSTATAKA QAVAPPNTRH VANGNMNHVA AASSHFTKSA 420 VINPRSEGPV VRTMHHASTA SAFVPKTVSE KRVSAASVPA APPVPSMPNV GKVAQTGPRK 480 PECVQKEQTP KNGASTTVVS QQTKTTSTNS ESNAEMQVAV SKSLDVLPKS MVVESKTTVS 540 PVNRAENKAT TVSPVNGAAS RTNVLPVNGA DGKSKAKDEV NNKDDGLSKL NNGSKGPEVV 600 TVAKSGNGM

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MADQSDQGKK RFITEGDIAS LLQRYDATTA LKLLQEVAYF AGPKIDWNAL VKKTSTGITN  60
AREYQMLWRH LAYRDSLTPV EDDAQPLDDD SDLDCELEAS PHVSNEASME ANAHVKVMAA  120
SYMPAESNIP DNSTKAPSTE GLNGNGSASG SVASRKKRKK WSPGEDAELI AAVKRCGEGN  180
WAHILRGEFK GERTASQLSQ RWALIRKRCD TSNSAPNQSG LQRTEAQMAA NHALSLAVGN  240
RAPAKKLTVG VSPMAPSGST AEVPAVGTSS SQAQPQPNVV QALPRTAASV PAVKYRVAAV  300
KKAPNSTSRT DLMVTANSVA AAACMAGPST TASVQAEPEK NAAEVVSKAE PGKPISATCM  360
PRPSGGLSVP KTEPGKSVTP ATTSTATAKA QAVAPPNTRH VANGNMNHVA AASSHFTKSA  420
VINPRSEGPV VRTMHHASTA SAFVPKTVSE KRVSAASVPA APPVPSMPNV GKVAQTGPRK  480
PECVQKEQTP KNGASTTVVS QQTKTTSTNS ESNAEMQVAV SKSLDVLPKS MVVESKTTVS  540
PVNRAENKAT TVSPVNGAAS RTNVLPVNGA DGKSKAKDEV NNKDDGLSKL NNGSKGPEVV  600
TVAKSGNGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	159	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544063.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544063.1	0.0	PREDICTED: mucin-5AC isoform X2
TrEMBL	D7KJT3	1e-180	D7KJT3_ARALL; DNA binding protein
STRING	XP_010544061.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	1e-129	MYB_related family protein