PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010544062.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 646aa    MW: 67492.8 Da    PI: 10.0114
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010544062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-08195239144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed  l+ avk+ G g+W+ I r      Rt+ q+  rw
   XP_010544062.1 195 RKKWSPGEDAELIAAVKRCGEGNWAHILRGEFkGERTASQLSQRW 239
                      789************************996555689999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.562190246IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-11191244IPR009057Homeodomain-like
SuperFamilySSF466897.03E-11192245IPR009057Homeodomain-like
SMARTSM007175.8E-7194245IPR001005SANT/Myb domain
PfamPF002494.8E-6195239IPR001005SANT/Myb domain
CDDcd116604.50E-13196244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MADQSDQGKK RFITEGDIAS LLQRYDATTA LKLLQEVAYF AGPKIDWNAL VKKTSTGITN  60
AREYQMLWRH LAYRDSLTPV EDDAQPLDDD SDLDCELEAS PHVSNEASME ANAHVKVMAA  120
SYMPAESNIP DNSTVEAPLT INIPNVKSSQ EPSESPWSSR GINITFPVSL QKAPSTEGLN  180
GNGSASGSVA SRKKRKKWSP GEDAELIAAV KRCGEGNWAH ILRGEFKGER TASQLSQRWA  240
LIRKRCDTSN SAPNQSGLQR TEAQMAANHA LSLAVGNRAP AKKLTVGVSP MAPSGSTAEV  300
PAVGTSSSQA QPQPNVVQAL PRTAASVPAV KYRVAAVKKA PNSTSRTDLM VTANSVAAAA  360
CMAGPSTTAS VQAEPEKNAA EVVSKAEPGK PISATCMPRP SGGLSVPKTE PGKSVTPATT  420
STATAKAQAV APPNTRHVAN GNMNHVAAAS SHFTKSAVIN PRSEGPVVRT MHHASTASAF  480
VPKTVSEKRV SAASVPAAPP VPSMPNVGKV AQTGPRKPEC VQKEQTPKNG ASTTVVSQQT  540
KTTSTNSESN AEMQVAVSKS LDVLPKSMVV ESKTTVSPVN RAENKATTVS PVNGAASRTN  600
VLPVNGADGK SKAKDEVNNK DDGLSKLNNG SKGPEVVTVA KSGNGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192196KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010544062.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544061.10.0PREDICTED: mucin-5AC isoform X1
RefseqXP_010544062.10.0PREDICTED: mucin-5AC isoform X1
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGXP_010544061.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-148MYB_related family protein