PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010544061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 646aa MW: 67492.8 Da PI: 10.0114 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.9e-08 | 195 | 239 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed l+ avk+ G g+W+ I r Rt+ q+ rw XP_010544061.1 195 RKKWSPGEDAELIAAVKRCGEGNWAHILRGEFkGERTASQLSQRW 239 789************************996555689999999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.562 | 190 | 246 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 191 | 244 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.03E-11 | 192 | 245 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-7 | 194 | 245 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-6 | 195 | 239 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.50E-13 | 196 | 244 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MADQSDQGKK RFITEGDIAS LLQRYDATTA LKLLQEVAYF AGPKIDWNAL VKKTSTGITN 60 AREYQMLWRH LAYRDSLTPV EDDAQPLDDD SDLDCELEAS PHVSNEASME ANAHVKVMAA 120 SYMPAESNIP DNSTVEAPLT INIPNVKSSQ EPSESPWSSR GINITFPVSL QKAPSTEGLN 180 GNGSASGSVA SRKKRKKWSP GEDAELIAAV KRCGEGNWAH ILRGEFKGER TASQLSQRWA 240 LIRKRCDTSN SAPNQSGLQR TEAQMAANHA LSLAVGNRAP AKKLTVGVSP MAPSGSTAEV 300 PAVGTSSSQA QPQPNVVQAL PRTAASVPAV KYRVAAVKKA PNSTSRTDLM VTANSVAAAA 360 CMAGPSTTAS VQAEPEKNAA EVVSKAEPGK PISATCMPRP SGGLSVPKTE PGKSVTPATT 420 STATAKAQAV APPNTRHVAN GNMNHVAAAS SHFTKSAVIN PRSEGPVVRT MHHASTASAF 480 VPKTVSEKRV SAASVPAAPP VPSMPNVGKV AQTGPRKPEC VQKEQTPKNG ASTTVVSQQT 540 KTTSTNSESN AEMQVAVSKS LDVLPKSMVV ESKTTVSPVN RAENKATTVS PVNGAASRTN 600 VLPVNGADGK SKAKDEVNNK DDGLSKLNNG SKGPEVVTVA KSGNGM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 196 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010544061.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544061.1 | 0.0 | PREDICTED: mucin-5AC isoform X1 | ||||
Refseq | XP_010544062.1 | 0.0 | PREDICTED: mucin-5AC isoform X1 | ||||
TrEMBL | D7KJT3 | 0.0 | D7KJT3_ARALL; DNA binding protein | ||||
STRING | XP_010544061.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4823 | 27 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-148 | MYB_related family protein |