PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010544016.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 399aa MW: 44117.2 Da PI: 5.6239

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010544016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	2.9e-10	223	271	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq XP_010544016.1 223 KSHSLAERVRREKISERMRLLQELVPGC----SKITGKAVMLDEIINYVQSLQ 271 68************************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-16	217	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.77E-11	218	275	No hit	No description
PROSITE profile	PS50888	15.688	220	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	221	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-7	223	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-10	226	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDGEAGEDGE MGFQHGEETG IEMTSMPLSA KVDPFFPSSD WDPLVSAMAS TNVFSRSHYT 60 SLVMENIGMS GFAHYQTGPG SSYADMSTGF LLPYGNLPDC NQIGHCIGSD EKGQSQPGKV 120 HEGHQVSEDG VLLGASPCRK RRQPEPEMAL SSQRNKKAVE VFRKNDQNKD QSKNRIESER 180 NMVEDSGGKT PTKETKEEEN SQSGETPKGN YIHVRTRRGQ ATKSHSLAER VRREKISERM 240 RLLQELVPGC SKITGKAVML DEIINYVQSL QQQVEFLSMK LSAVNPEVKI DIDRTRAKDV 300 TSNFHNECSS SLKSTTLSLS DQILHSRDEN GYVLGLRTGM NLLHPYNTIQ GIIPNIPTTN 360 SQLNPLSQTV IDTELQSIYQ MVLVSNTSNT DSFPPDGVN

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDGEAGEDGE MGFQHGEETG IEMTSMPLSA KVDPFFPSSD WDPLVSAMAS TNVFSRSHYT  60
SLVMENIGMS GFAHYQTGPG SSYADMSTGF LLPYGNLPDC NQIGHCIGSD EKGQSQPGKV  120
HEGHQVSEDG VLLGASPCRK RRQPEPEMAL SSQRNKKAVE VFRKNDQNKD QSKNRIESER  180
NMVEDSGGKT PTKETKEEEN SQSGETPKGN YIHVRTRRGQ ATKSHSLAER VRREKISERM  240
RLLQELVPGC SKITGKAVML DEIINYVQSL QQQVEFLSMK LSAVNPEVKI DIDRTRAKDV  300
TSNFHNECSS SLKSTTLSLS DQILHSRDEN GYVLGLRTGM NLLHPYNTIQ GIIPNIPTTN  360
SQLNPLSQTV IDTELQSIYQ MVLVSNTSNT DSFPPDGVN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010544016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010544015.1	0.0	PREDICTED: transcription factor bHLH74 isoform X1
Refseq	XP_010544016.1	0.0	PREDICTED: transcription factor bHLH74 isoform X1
Refseq	XP_010544018.1	0.0	PREDICTED: transcription factor bHLH74 isoform X1
Refseq	XP_010544019.1	0.0	PREDICTED: transcription factor bHLH74 isoform X1
Refseq	XP_010544020.1	0.0	PREDICTED: transcription factor bHLH74 isoform X1
Refseq	XP_010544021.1	0.0	PREDICTED: transcription factor bHLH74 isoform X1
Swissprot	Q6NKN9	1e-126	BH074_ARATH; Transcription factor bHLH74
TrEMBL	R0I6X0	1e-125	R0I6X0_9BRAS; Uncharacterized protein
STRING	XP_010544015.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	1e-119	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]