PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010543999.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 686aa MW: 78580.3 Da PI: 7.6062

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010543999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.1	3e-18	66	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+ +Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r+++r+gC+ l+++k + +w+vt + ++HnHel XP_010543999.1 66 EYYSGFAKRCGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGNTPTKPLSEGKPQRNRKSSRCGCQSYLRISKITelgLTEWRVTGFANHHNHELL 159 69***********9998877355667999**********99999*****************99777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-15	66	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-20	282	372	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.854	561	594	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.9E-8	564	592	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.4E-6	569	596	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MSDDGGQMML LYDDPSDHHH HHHSLSLDEA SSAEESPDGT TLSVDTADDA IPYIGQRFPT 60 HDAAYEYYSG FAKRCGFSIR RHRTEGKDGV GRGLTRRYFV CHRAGNTPTK PLSEGKPQRN 120 RKSSRCGCQS YLRISKITEL GLTEWRVTGF ANHHNHELLE PNQVRFLPAY RSISDADKNR 180 ILMFSKTGIS VQQMMRLMEL EKCVEPGFLP FTEKDVRNLL QSFRKLDPED ESIDLLRMCQ 240 SIKEKDPNFR FEFTLDANDK LENIAWSYAS SVQSYEIFGD AVVFDTTHRL SAVEMPLGIW 300 VGINNYGMPC FFGCVLLREE NLRSWSWALK AFVRFMNGKA PQTMLTDHNM CIKEAVAAEM 360 PSTKHALCIW MIVGKFPSWF NAVLGERYND WKAEFFRLYN LETVEDFELG WRDMVDSFGL 420 HTNRHINNLF ASRPLWALPY LRSHFLAGMT LSGRSKAINA FIQRFLSAQT RLAHFVEQVA 480 VAVDFKDQAA EQQTMQQNLQ NISLKTGAPM ESHAASVLTP FAFSKLQEQL VLAAHYASFQ 540 MEDGCYLVRH HTKLDGGRKV YWVPQEGIVS CSCQHFEFSG ILCRHALRVL STGNCFQIPD 600 RYLPLRWRRI SAGFGKTFRH NNQDDQVGRV QFLQNLVSTL VSESSKSKER LEIATEQISV 660 LLSRIREQPI SSHVLRDICS DVQRNF

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MSDDGGQMML LYDDPSDHHH HHHSLSLDEA SSAEESPDGT TLSVDTADDA IPYIGQRFPT  60
HDAAYEYYSG FAKRCGFSIR RHRTEGKDGV GRGLTRRYFV CHRAGNTPTK PLSEGKPQRN  120
RKSSRCGCQS YLRISKITEL GLTEWRVTGF ANHHNHELLE PNQVRFLPAY RSISDADKNR  180
ILMFSKTGIS VQQMMRLMEL EKCVEPGFLP FTEKDVRNLL QSFRKLDPED ESIDLLRMCQ  240
SIKEKDPNFR FEFTLDANDK LENIAWSYAS SVQSYEIFGD AVVFDTTHRL SAVEMPLGIW  300
VGINNYGMPC FFGCVLLREE NLRSWSWALK AFVRFMNGKA PQTMLTDHNM CIKEAVAAEM  360
PSTKHALCIW MIVGKFPSWF NAVLGERYND WKAEFFRLYN LETVEDFELG WRDMVDSFGL  420
HTNRHINNLF ASRPLWALPY LRSHFLAGMT LSGRSKAINA FIQRFLSAQT RLAHFVEQVA  480
VAVDFKDQAA EQQTMQQNLQ NISLKTGAPM ESHAASVLTP FAFSKLQEQL VLAAHYASFQ  540
MEDGCYLVRH HTKLDGGRKV YWVPQEGIVS CSCQHFEFSG ILCRHALRVL STGNCFQIPD  600
RYLPLRWRRI SAGFGKTFRH NNQDDQVGRV QFLQNLVSTL VSESSKSKER LEIATEQISV  660
LLSRIREQPI SSHVLRDICS DVQRNF

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010543999.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010543997.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D3C900	0.0	A0A0D3C900_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1K9	0.0	A0A3P6F1K9_BRAOL; Uncharacterized protein
TrEMBL	R0IH94	0.0	R0IH94_9BRAS; Uncharacterized protein
STRING	XP_010543998.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]