PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543951.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 349aa    MW: 40693.1 Da    PI: 6.5229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-0767129243
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksr 43 
                      +r+++eEdel + av+++  +                      +Wk Ia+ ++  Rt+ ++  r
   XP_010543951.1  67 KRFSKEEDELVKAAVQEYIDNhglaeeglnmvmkcksipkvknCWKEIAAALP-WRTRSSVYYR 129
                      69*****************99********************************.***9988665 PP
2Myb_DNA-binding22.72.3e-07140173238
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                       +WT+e  el ++  +++G++ Wkt a+ mgk   + 
   XP_010543951.1 140 RSWTPEQLELVKNFAEKHGSD-WKTLAEVMGK--HRW 173
                      68*******************.********94..344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.6E-665136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-767129IPR009057Homeodomain-like
PROSITE profilePS500905.05368134IPR017877Myb-like domain
CDDcd001670.0066468131No hitNo description
SMARTSM007170.006138185IPR001005SANT/Myb domain
PROSITE profilePS500906.214139183IPR017877Myb-like domain
SuperFamilySSF466891.79E-7139200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-6141195IPR009057Homeodomain-like
PfamPF139211.5E-10142200No hitNo description
PROSITE profilePS500907.712184252IPR017877Myb-like domain
SMARTSM007171.4188254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-7196271IPR009057Homeodomain-like
SuperFamilySSF466893.15E-7232306IPR009057Homeodomain-like
PROSITE profilePS500907.724254307IPR017877Myb-like domain
SMARTSM0071731258309IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
TERSAKKKKK KKQEQTKNAE PETPSSSKSA KRVTFSDQVD MFPLSDGGVS EDEFKEDEGN  60
VELMMGKRFS KEEDELVKAA VQEYIDNHGL AEEGLNMVMK CKSIPKVKNC WKEIAAALPW  120
RTRSSVYYRA HILFEGDPKR SWTPEQLELV KNFAEKHGSD WKTLAEVMGK HRWHVKDAWR  180
RIKFPNMNKI RWSREEYQTL FDLVNMDLRT KALQEKNSKH GMLRDNIPWT AISEQLGTRT  240
HSNCCIKWYR QLTSPMVAEG IWDNSDDYLL LDELMKLDAA CMEDVDWDSL LENRTGELCR  300
KRWNQMVLHI GVPGSKSFSD QVEILADRYC PDLAEDRAAF DQRPYDDDK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543951.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541646.10.0PREDICTED: RNA polymerase I termination factor-like
RefseqXP_019058259.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A1J3FAK81e-155A0A1J3FAK8_NOCCA; Transcription termination factor 1
STRINGXP_010541646.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-155MYB_related family protein