PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010543922.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 315aa MW: 36398.1 Da PI: 8.0426

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010543922.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.8e-06	146	165	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C ksF+r nL+ H+ XP_010543922.1 146 FTCHVCFKSFNRYNNLQMHM 165 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.77E-6	137	168	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-4	138	168	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.138	146	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.46E-5	210	250	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MLKPLISFMH TFEQISSSSS SGNPRDDLKP LYLFPNTPLN PIYDDFIEPL PLIDLINSNT 60 NKEEEEDEEE DDEENEYEND DEVNLSLHIG LPEYYPSKCK KRRRKKKKKE KEKEIAIDEV 120 GEGHVVSGKP YWIPTAEQIH IGFTHFTCHV CFKSFNRYNN LQMHMWGHGS QYRKGPDSLK 180 GTQPRAMLGI PCFCCVEGCK NHIDHPRSKP LKDFRTLQTH FKRKHGHKPY ACRSCGKQLA 240 VKGDWRTHEK NCGKRWVCVC GSDFKHKRSL KDHVRAFGSG HGPYQTGLFD DNVAVLDRAT 300 SSLSETNVFS YNSYR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	104	KKRRRK
2	99	106	KKRRRKKK
3	100	108	KRRRKKKKK
4	102	108	RRKKKKK
5	102	109	RRKKKKKE
6	103	109	RKKKKKE
7	103	110	RKKKKKEK

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010543922.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010543922.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1 isoform X1
Swissprot	Q8VWG3	1e-129	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	Q700E7	1e-127	Q700E7_ARATH; At1g34790
STRING	XP_010543922.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-125	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]