PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543783.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 644aa    MW: 73475.4 Da    PI: 8.0318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-08588631445
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      W++  +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
   XP_010543783.1 588 WSAVQERALVQALKTFPKEtsqRWERVAASVP-GKTVSQCKKKFA 631
                      ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.88E-2169178IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.9E-2096201IPR001623DnaJ domain
SMARTSM002719.3E-1699174IPR001623DnaJ domain
PROSITE profilePS5007618.456100182IPR001623DnaJ domain
CDDcd062577.64E-14100171IPR001623DnaJ domain
PfamPF002264.7E-17100179IPR001623DnaJ domain
PRINTSPR006254.2E-7105123IPR001623DnaJ domain
PRINTSPR006254.2E-7123138IPR001623DnaJ domain
PRINTSPR006254.2E-7154174IPR001623DnaJ domain
PROSITE patternPS006360159178IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.924458513IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-4460505IPR009057Homeodomain-like
SMARTSM007172.1E-5462515IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-7464507IPR009057Homeodomain-like
CDDcd001679.79E-4465505No hitNo description
PROSITE profilePS512939.779583638IPR017884SANT domain
SMARTSM007173.6E-8584636IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-4586632IPR009057Homeodomain-like
SuperFamilySSF466899.72E-9586641IPR009057Homeodomain-like
CDDcd001673.13E-6588634No hitNo description
PfamPF002491.0E-6588632IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MQSLKLNSAV KLITYSEELA GGEPLYASSN CLPVKALKLE PAGHAFHSAV LKLLGCSEEA  60
AENEDSGKKV TTNDKDSAYI PSYDSYTTKG KKKSGKQQED HYALLGLSHL RYLATEDQIR  120
KSYREAALRH HPDKLAALLL AEETEEAKQA KKDEIESRFK LIQEAYEVLM DPIRRRIYDS  180
TDEFDDEIPT DCAPQDFFKV FGPAFKRNAR WSVTQPIPEL GDDSTSMTGV DNFYNFWYGF  240
KSWREFPHAD EYDIEQAESR DDRRWMERQN AKLSEKARKE EYARIRTLVD NAYKRDPRIV  300
RRKEEQKAEK QRKKEAKLLA KKLQEEEAAR AAEEEKRQKE EQEKLAAETA QQQKRAKEKE  360
KKLLRKERIR LRTLSAPVVA QHLLDISEED VENLCMTYNT EQLRDLCNDM DKKEGMDLAK  420
VLRDACSSKN NVETDSSKKH DNEKTSQQNG FAEANGSSFQ KKEKPWSKEE IDLLRKGMVK  480
YPKGTSRRWE VISEYISTGR SVEEILKATK TVLLQKPDSS KAFDSFLEKR KPAATIASPL  540
STREELGESG PTLTSENKSR EESSSNLSSD SNNTETATAA SGSDQDGWSA VQERALVQAL  600
KTFPKETSQR WERVAASVPG KTVSQCKKKF AELKEIIRNK KSAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1719629920123Zuotin
5dje_B2e-1719629920123Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543783.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543783.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010543783.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-139DnaJ domain ;Myb-like DNA-binding domain