PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543747.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 279aa    MW: 32035.8 Da    PI: 9.4636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-092572247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g WT+eE +++ +a + +  +   +W +Ia++++ g+t  ++   ++k+
   XP_010543747.1 25 GTWTKEENKKFERALAIYAEDtpdRWFRIAAMIP-GKTVSDVMKQYNKL 72
                     79*****************99*************.***********997 PP
2Myb_DNA-binding39.81.1e-12123167347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_010543747.1 123 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 167
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.4742277IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.5E-52372IPR009057Homeodomain-like
SMARTSM007175.2E-112375IPR001005SANT/Myb domain
SuperFamilySSF466892.62E-122580IPR009057Homeodomain-like
PfamPF002493.4E-82572IPR001005SANT/Myb domain
CDDcd001674.08E-92672No hitNo description
PROSITE profilePS5129418.78116172IPR017930Myb domain
SuperFamilySSF466891.86E-15117171IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17119171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.0E-11120172IPR009057Homeodomain-like
SMARTSM007171.7E-10120170IPR001005SANT/Myb domain
PfamPF002494.7E-10123167IPR001005SANT/Myb domain
CDDcd001671.02E-8123167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
METLHPLSHV SMSDRFAHEI MNRSGTWTKE ENKKFERALA IYAEDTPDRW FRIAAMIPGK  60
TVSDVMKQYN KLEEDVFDIE AGRVPIPGYP PSSFRFDHRD FDANRKRPIG GRGTEQERKK  120
GVPWTEEEHR RFLLGLLKYG KGDWRNISRN FVVSKTPTQV ASHAQKYYQR QLSGAKDKRR  180
PSIHDITTVN LLNANSRNNQ SRPLPDHRCG FLPQTHQNAE VFRDNEAENA AFLEQNLSSG  240
LLFSPTSSPD DDDAAFLNGI KFFGQNTYSP GAYRNSLFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1627891173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543747.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3N6Q5511e-121A0A3N6Q551_BRACR; Uncharacterized protein
STRINGXP_010543747.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-120MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]