PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010543715.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 22703 Da PI: 10.7227 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.4e-19 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W +e d +lv++v+q+G+++W++I++ ++ gRt+k+c++rw + XP_010543715.1 18 KGPWRPEQDAQLVKLVHQYGPRNWSLISSLIP-GRTGKSCRLRWCNQ 63 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.5e-18 | 72 | 113 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + T eEd l+v+a++ +G++ W+tIar ++ gRt++ +k+rw++ XP_010543715.1 72 PYTLEEDNLIVQAHAIHGNK-WATIARLLP-GRTDNAVKNRWNS 113 679*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.978 | 13 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.73E-30 | 17 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-16 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-18 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-25 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.78E-14 | 20 | 62 | No hit | No description |
SMART | SM00717 | 2.0E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.799 | 69 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 72 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.7E-15 | 72 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.70E-12 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MRMRKKREGE ERKKAGVKGP WRPEQDAQLV KLVHQYGPRN WSLISSLIPG RTGKSCRLRW 60 CNQLRPEVHH RPYTLEEDNL IVQAHAIHGN KWATIARLLP GRTDNAVKNR WNSALQRRPH 120 LDPAKGFNPF GATQNKRQRL DSSNNGDSVA GKPAEANAMQ PKAEEERKCM MQILQQMIAQ 180 EVKSYIDGLV SEAKDNLAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-38 | 17 | 118 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 8e-38 | 17 | 118 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 8e-38 | 17 | 118 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1 | 13 | RMRKKREGEERKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010543715.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010543715.1 | 1e-148 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | Q9FDW1 | 8e-49 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | M5XTD9 | 1e-57 | M5XTD9_PRUPE; Uncharacterized protein | ||||
STRING | XP_010543715.1 | 1e-147 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-49 | myb domain protein r1 |