PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543714.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 266aa    MW: 29839.3 Da    PI: 5.8401
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543714.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.7e-1535116286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +Liea  ++  +l+rg+l++ +W+ev++++   +  g  ++ +qCk++++ l+k+yk++k+ ++       st+++f +l+
  XP_010543714.1  35 WSEDATATLIEAWGDRYVKLNRGNLRQSDWKEVADAVnsgHGNGKPKTDIQCKNRIDTLKKKYKAEKAKSSP------STWRFFPRLD 116
                     *************************************8777778899*******************999886......68****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014472.33E-6615No hitNo description
PfamPF138374.4E-2633117No hitNo description
SuperFamilySSF1014472.33E-66269No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
METTPPPPPP PPPPPPSQQQ SGGSQRPSAG REDWWSEDAT ATLIEAWGDR YVKLNRGNLR  60
QSDWKEVADA VNSGHGNGKP KTDIQCKNRI DTLKKKYKAE KAKSSPSTWR FFPRLDTLIG  120
PVLKKSSTAG ASGAVKSAPL ISRLKPTGSK STDSSLDDDD DDDDDDEDDD EAGDWGFVAR  180
KHRRVEEVDL REGSACRELA RAILKFGEVY ERIEGEKQQM AIELEKQRME IAKEVELQRM  240
NMLMEMQLEL EKSKHRKHET GSGKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543714.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543714.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG89e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLQ94AX71e-114Q94AX7_ARATH; AT5g05550/MOP10_9
TrEMBLQ9FFG01e-114Q9FFG0_ARATH; AT5G05550 protein
STRINGXP_010543714.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-100sequence-specific DNA binding transcription factors