PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543464.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 481aa    MW: 53099.1 Da    PI: 4.9109
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.4e-35911821101
                     HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     aFl+k++++++d++l+ +isw ++g+sfvv+d+ efa+ +Lp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++ F++gkk+ll+
  XP_010543464.1  91 AFLSKTFDLVDDPNLDPIISWGQTGSSFVVWDPVEFARVILPRNFKHNNFSSFVRQLNTYGFRKIDSDR---------WEFANEAFRRGKKHLLK 176
                     69****************************************************************999.........***************** PP

                     XXXXXX CS
    HSF_DNA-bind  96 kikrkk 101
                     +i+r++
  XP_010543464.1 177 NIHRRR 182
                     ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.52E-3587181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-5888181IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.0E-3789181IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.0E-1892115IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3192181IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-18130142IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340131155IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-18143155IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSPEKDNPSK QPPVSGAAIP TISTRPESGS PYIYTDMDFS ASPLSSPLSG FEPFSTSGAP  60
PPAAGICGDG EAEGFEVPQP LECLQGNPIP AFLSKTFDLV DDPNLDPIIS WGQTGSSFVV  120
WDPVEFARVI LPRNFKHNNF SSFVRQLNTY GFRKIDSDRW EFANEAFRRG KKHLLKNIHR  180
RRLPQSQQAT TSSNSFRSAL EVGAEIENLR KERKVLIEEV VELQQQHRGT ARHMDTVNQR  240
LQAAEQRQKQ MLSFLAKLFQ NPSLLERLRS RRGGGALGSS SCSKMRRKFI KHQQHNEGSK  300
LDSPTGTEGQ LEKYTADDTG MMVTNTDLSI AEEEVLPFPL AEQFSGQGAS SSGTGQRPEQ  360
YLDTKGKDLM NPPEEMMNSE YFASFPSPGG LYNVVKQEEI WNISVSTMPS SSNTELWSDV  420
INYEFPALGP VSAVTTTATG GLSDVCWDLG SEPLASAVSE FGFNWPTGEN PSPDDNTRKT  480
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-258918117120Heat shock factor protein 1
5d5u_B8e-258918126129Heat shock factor protein 1
5d5v_B8e-258918126129Heat shock factor protein 1
5d5v_D8e-258918126129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Involved in heat stress response. Activated by DREB2A under heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543464.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:17999647, ECO:0000269|PubMed:18261981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543464.10.0PREDICTED: heat stress transcription factor A-3 isoform X1
SwissprotQ8GYY11e-150HSFA3_ARATH; Heat stress transcription factor A-3
TrEMBLD7LWT01e-155D7LWT0_ARALL; AT-HSFA3
STRINGXP_010543464.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109502529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-142heat shock transcription factor A3
Publications ? help Back to Top
  1. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]
  4. Hu Z, et al.
    Histone acetyltransferase GCN5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis.
    Plant J., 2015. 84(6): p. 1178-91
    [PMID:26576681]
  5. Song C,Chung WS,Lim CO
    Overexpression of Heat Shock Factor Gene HsfA3 Increases Galactinol Levels and Oxidative Stress Tolerance in Arabidopsis.
    Mol. Cells, 2016. 39(6): p. 477-83
    [PMID:27109422]
  6. Kim GD,Cho YH,Lee BH,Yoo SD
    STABILIZED1 Modulates Pre-mRNA Splicing for Thermotolerance.
    Plant Physiol., 2017. 173(4): p. 2370-2382
    [PMID:28223317]
  7. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]