PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010543303.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 545aa    MW: 60400.1 Da    PI: 9.3101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010543303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14e-1875121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l++av+++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   XP_010543303.1  75 KGGWTPEEDDTLKKAVTMYKGKSWKKIAEFFP-DRTEVQCLHRWQKVL 121
                      688*****************************.************986 PP
2Myb_DNA-binding59.76.3e-19127173148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++++++vk++G   W+ Iar ++ gR +kqc++rw+++l
   XP_010543303.1 127 KGPWTQEEDDKIIELVKKFGAAKWSVIARSLP-GRIGKQCRERWHNHL 173
                      79******************************.*************97 PP
3Myb_DNA-binding51.81.9e-16179222146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++W teE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   XP_010543303.1 179 KDAWATEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 222
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.85870121IPR017930Myb domain
SuperFamilySSF466892.87E-1572128IPR009057Homeodomain-like
SMARTSM007173.6E-1574123IPR001005SANT/Myb domain
PfamPF002494.6E-1675121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2077127IPR009057Homeodomain-like
CDDcd001674.57E-1378121No hitNo description
PROSITE profilePS5129430.75122177IPR017930Myb domain
SuperFamilySSF466891.09E-30124220IPR009057Homeodomain-like
SMARTSM007172.2E-17126175IPR001005SANT/Myb domain
PfamPF002491.9E-17127173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-26128175IPR009057Homeodomain-like
CDDcd001673.91E-15129173No hitNo description
Gene3DG3DSA:1.10.10.606.0E-22176228IPR009057Homeodomain-like
SMARTSM007172.2E-14178226IPR001005SANT/Myb domain
PROSITE profilePS5129421.431178228IPR017930Myb domain
PfamPF002492.7E-14179222IPR001005SANT/Myb domain
CDDcd001677.99E-11181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSYSSNPVAC SREEGETGEA RIEDQCMENK QLTAASSSSM SEGSGNSLLK SPGVASPATA  60
SPTHRRTTGP IRRAKGGWTP EEDDTLKKAV TMYKGKSWKK IAEFFPDRTE VQCLHRWQKV  120
LNPELVKGPW TQEEDDKIIE LVKKFGAAKW SVIARSLPGR IGKQCRERWH NHLNPNIRKD  180
AWATEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF YLATGNLPPA  240
AKYGFPNGAR DHGVPDTARD SKQSCAVKPS SSYQNKDSDS VAQTSSGTTD INKPDEDGRD  300
HAINSSALLE EAAASSKIRV NQYACSPAVE YKPQMHNNSR PFPENGAVNS RGYEDRIATE  360
VGIGTPKHGS LWYKPPADLY LPSEVDFQRV YGYESGCSPG TSPVSFFTPP CSKGSNFAAR  420
SPESFLREAA KTFPNTPSIF RKRRKIAVEQ RENDNATGKI DGDSGAKRVD KEEENTENRS  480
EKSPAQREVS TQSPDCHDNK NRGSNGSAYN VSPAYRLRSK RTAVFKSRQL EFMSEKENPG  540
NETKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-68742285159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-68742285159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010543303.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010543303.10.0PREDICTED: myb-related protein 3R-1
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010543303.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]