PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542642.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 709aa MW: 79944.4 Da PI: 5.1947

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.9	2e-107	329	706	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfs 94 ++lLl cA+ +s+gd+ lL ++++ +s gd+ qRla++f+++L+arl++++s++ + s +s+k+ ++ l a++++ ++P++++ XP_010542642.1 329 RTLLLLCAQTISAGDKGSGLDLLRQIRQKSSAIGDSSQRLAHCFANGLEARLHGTTSSVTPTYYGSLASKKKmtAADILEAYRVYLSACPFITLI 423 689*************************************************9999998885555544444499*************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 ++ N++Il+ ++ +Hi+Df+i +G+QWp ++q +++++ gp +lRiTg++ p+ g +e+++etg+rLa++++++gvpfefn++++++++ XP_010542642.1 424 YFFSNRMILDVAKDVPVLHIVDFGILYGFQWPMFIQYITNKKCGPSKLRITGIELPQGGfrPAEKIQETGRRLAEYCKRFGVPFEFNAIASQNWD 518 *****************************************************9999************************999* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++++e+L+++p+E+laVn+ l+ ++l de++ e+ +rd+vL+l+++++P++++++ + n++ F +rf +al +ysalfd+++++lpre++e XP_010542642.1 519 TIRIEDLKLRPNETLAVNCGLRFKNLQDETAGEENcPRDAVLRLIRRMNPDIFTHSIINGAFNAPFFTTRFKQALFHYSALFDMFDSTLPRENRE 613 *****************************999999****************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r+ +Ere+ gre++nv+acegaer+er et+++W+ r+++aGF++ p++ + ++ ++ l++ + + + v+e+++++++gWk+r L++ S+W XP_010542642.1 614 RMRLEREFYGREAMNVIACEGAERVERPETYKQWQVRMGRAGFRQKPVEAELVECFRRKLERWGyHKDFVVDEDNNWFLQGWKGRILYASSCW 706 ***********************************************************99999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.931	302	686	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-105	329	706	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MESNFSAALT MGLDCYNGKI SPTPIPDLGF GVPSSSDFIP YPSFITDTPS VWVPTRDEWS 60 PSSGDETDSS NALLNYVSQI LMEESIGDQP SMFYDSLALQ QTEQMLQQVI SDSRAQSFIP 120 HGSLASMGSD DLWRCDSSSS FDAGCSADAV GVSDRPGDSE FESCIVFPGS TNMLGDGLIG 180 NEILVRSMFS DADSVLQFNK GLEEAKKFLP GSEKMFPARD RERNEGAFGM VRVKEETGSD 240 VLRVRKTQEW KELDLEEESR SCKLSASNVE EDGNVTEMFD KVLLLDAKFD PPTVIESEKA 300 SDGSGGRGEK PRGKKEGRRK KRNETVDFRT LLLLCAQTIS AGDKGSGLDL LRQIRQKSSA 360 IGDSSQRLAH CFANGLEARL HGTTSSVTPT YYGSLASKKK MTAADILEAY RVYLSACPFI 420 TLIYFFSNRM ILDVAKDVPV LHIVDFGILY GFQWPMFIQY ITNKKCGPSK LRITGIELPQ 480 GGFRPAEKIQ ETGRRLAEYC KRFGVPFEFN AIASQNWDTI RIEDLKLRPN ETLAVNCGLR 540 FKNLQDETAG EENCPRDAVL RLIRRMNPDI FTHSIINGAF NAPFFTTRFK QALFHYSALF 600 DMFDSTLPRE NRERMRLERE FYGREAMNVI ACEGAERVER PETYKQWQVR MGRAGFRQKP 660 VEAELVECFR RKLERWGYHK DFVVDEDNNW FLQGWKGRIL YASSCWVPL

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MESNFSAALT MGLDCYNGKI SPTPIPDLGF GVPSSSDFIP YPSFITDTPS VWVPTRDEWS  60
PSSGDETDSS NALLNYVSQI LMEESIGDQP SMFYDSLALQ QTEQMLQQVI SDSRAQSFIP  120
HGSLASMGSD DLWRCDSSSS FDAGCSADAV GVSDRPGDSE FESCIVFPGS TNMLGDGLIG  180
NEILVRSMFS DADSVLQFNK GLEEAKKFLP GSEKMFPARD RERNEGAFGM VRVKEETGSD  240
VLRVRKTQEW KELDLEEESR SCKLSASNVE EDGNVTEMFD KVLLLDAKFD PPTVIESEKA  300
SDGSGGRGEK PRGKKEGRRK KRNETVDFRT LLLLCAQTIS AGDKGSGLDL LRQIRQKSSA  360
IGDSSQRLAH CFANGLEARL HGTTSSVTPT YYGSLASKKK MTAADILEAY RVYLSACPFI  420
TLIYFFSNRM ILDVAKDVPV LHIVDFGILY GFQWPMFIQY ITNKKCGPSK LRITGIELPQ  480
GGFRPAEKIQ ETGRRLAEYC KRFGVPFEFN AIASQNWDTI RIEDLKLRPN ETLAVNCGLR  540
FKNLQDETAG EENCPRDAVL RLIRRMNPDI FTHSIINGAF NAPFFTTRFK QALFHYSALF  600
DMFDSTLPRE NRERMRLERE FYGREAMNVI ACEGAERVER PETYKQWQVR MGRAGFRQKP  660
VEAELVECFR RKLERWGYHK DFVVDEDNNW FLQGWKGRIL YASSCWVPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-42	332	706	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	320	KPRGKKEGRRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542642.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542642.1	0.0	PREDICTED: scarecrow-like protein 34
Swissprot	Q3EDH0	0.0	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A1J3JRN6	0.0	A0A1J3JRN6_NOCCA; Scarecrow-like protein 31
TrEMBL	V4NWZ8	0.0	V4NWZ8_EUTSA; Uncharacterized protein
STRING	XP_010542642.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	0.0	GRAS family protein