PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542393.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YA
Protein Properties Length: 262aa    MW: 29332 Da    PI: 10.0607
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.59.6e-33126182158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF
  XP_010542393.1 126 NEPIYVNAKQYHAILRRRQNRAKLEAQNKL-IKFRKPYLHESRHLHALKRARGSGGRF 182
                     59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-37124185IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.575125185IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.4E-27127182IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-24128150IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860130150IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.9E-24159182IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTDNLSLRME VMSTHFHGMK QSGFQLKDQD SSSTQSTGQS CGEVASFVEH NHCTNLSGCE  60
ENSGKPDGSH TKSTSSMASW PLHCTAPPYL GGFMASAYAS QPMVAYPEMM GLIPSRMPLP  120
HNITENEPIY VNAKQYHAIL RRRQNRAKLE AQNKLIKFRK PYLHESRHLH ALKRARGSGG  180
RFLNTKKKIK ETKQVHKQDS PKKNPLEIQR DNGSTIMSGT DRTSASNSNR NNNDGDNNGM  240
FQHAQFRFCG YPSSTHHVSV LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-22126188264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542393.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542393.10.0PREDICTED: nuclear transcription factor Y subunit A-6-like isoform X2
SwissprotQ9LVJ74e-80NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBLV4NPX03e-89V4NPX0_EUTSA; Uncharacterized protein
STRINGXP_010542390.11e-175(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-70nuclear factor Y, subunit A6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]