PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542390.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YA

Protein Properties

Length: 273aa MW: 30487.3 Da PI: 10.0607

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.4	1e-32	137	193	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rakle+++kl +k rkpylheSRh hAl+R+RgsgGrF XP_010542390.1 137 NEPIYVNAKQYHAILRRRQNRAKLEAQNKL-IKFRKPYLHESRHLHALKRARGSGGRF 193 59**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.1E-37	135	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.575	136	196	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.7E-27	138	193	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.0E-24	139	161	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	141	161	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.0E-24	170	193	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MTDNLSLRME VMSTHFHGMK QSGFQLKDQD SSSTQSTGQS CGEVASFVEH NHCTNLSGCE 60 ENSGKPDGSH TKSTSSMVSQ NSVFPPAQAS WPLHCTAPPY LGGFMASAYA SQPMVAYPEM 120 MGLIPSRMPL PHNITENEPI YVNAKQYHAI LRRRQNRAKL EAQNKLIKFR KPYLHESRHL 180 HALKRARGSG GRFLNTKKKI KETKQVHKQD SPKKNPLEIQ RDNGSTIMSG TDRTSASNSN 240 RNNNDGDNNG MFQHAQFRFC GYPSSTHHVS VLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-22	137	199	2	64	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542391.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-6-like isoform X1
Refseq	XP_010542392.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-6-like isoform X1
Swissprot	Q9LVJ7	6e-83	NFYA6_ARATH; Nuclear transcription factor Y subunit A-6
TrEMBL	V4NPX0	4e-95	V4NPX0_EUTSA; Uncharacterized protein
STRING	XP_010542390.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11633	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	3e-75	nuclear factor Y, subunit A5

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]