PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542376.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 326aa    MW: 35960.6 Da    PI: 9.1329
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.71.3e-1771156186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspk..qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  + +Li+a  e+  +l+rg+lk+++W++v++ ++++gf +sp+  qCk++++ ++k+yk++k++     ++  s++++f++l+
  XP_010542376.1  71 CWSEAATAVLIDAWGERFLELSRGNLKQKHWKDVAEIVSREGFGKSPTdlQCKNRIDTVKKKYKQEKARIAA--CGGPSKWVFFEKLD 156
                     7********************************************997669*******************98..9999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-2669158No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEEDGETPPA TSHSPDLSSP PRNQTKPEPP ASAPSSPLDA SALMPLSQAV VAGGGGNSSN  60
GRSGGGGRED CWSEAATAVL IDAWGERFLE LSRGNLKQKH WKDVAEIVSR EGFGKSPTDL  120
QCKNRIDTVK KKYKQEKARI AACGGPSKWV FFEKLDRLLG AAANFPSTGG GGPMGIPIYS  180
RWNPYQRQAK ATPPQQEGVV RRCNESTGWH FRKRSASETE SESEPELSGD SGDSLPAPRL  240
LSAKRVKIDK TGGRGERELG ELVRAMLRFT ESYEKAETAK LKQMAEMEKE RMKFLKELEL  300
QRMQFLKTQL EISQLKQDQI LKNEKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542376.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542376.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X2
SwissprotQ9SYG26e-74ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBLA0A3N6Q5U22e-89A0A3N6Q5U2_BRACR; Uncharacterized protein
STRINGXP_010542375.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54060.12e-666B-interacting protein 1-like 1