PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010542375.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 331aa MW: 36366.9 Da PI: 8.8747

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010542375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.2	6.9e-16	71	156	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspk..qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++ + ++++gf +sp+ qCk++++ ++k+yk++k++ + ++ s++++f++l+ XP_010542375.1 71 CWSEAATAVLIDAWGERFLELSRGNLKQKHWKDGAGIVSREGFGKSPTdlQCKNRIDTVKKKYKQEKARIAS--CGGPSKWVFFEKLD 156 7******************************************997669****************8..9999******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-23	69	158	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEEDGETPPA TSHSPDLSSP PRNQTKPEPP ASAPSSPLDA SALMPLSQAV VAGGGGNSSN 60 GRSGGGGRED CWSEAATAVL IDAWGERFLE LSRGNLKQKH WKDGAGIVSR EGFGKSPTDL 120 QCKNRIDTVK KKYKQEKARI ASCGGPSKWV FFEKLDRLLG AAANFPSTGG GESPPKIPMG 180 IPIYSRWNPY QRQAKATPPQ QEGVVRRCNE STGWHFRKRS ASETESESEP ELSGDSGDSL 240 PAPRLLSAKR VKIDKTGGRG DREFGELVRA IRGFTEAYEK AETAKLKQMA EMEKERMKFL 300 MELELQRMQF LKTQLEISQL MQDQSLKNEK E

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269\|PubMed:19155348, ECO:0000269\|PubMed:21330492, ECO:0000269\|PubMed:22231199}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010542375.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010542375.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like isoform X1
Swissprot	Q9SYG2	8e-73	ASIL1_ARATH; Trihelix transcription factor ASIL1
TrEMBL	A0A3N6Q5U2	2e-86	A0A3N6Q5U2_BRACR; Uncharacterized protein
STRING	XP_010542375.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6262	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54060.1	3e-65	6B-interacting protein 1-like 1