PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542309.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 607aa    MW: 66018.8 Da    PI: 9.1636
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542309.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.31.2e-2955139187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e+laL+++r++m++ +r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++ke++++r+  + + +++f+qlea
  XP_010542309.1  55 RWPREETLALLRIRSDMDSIFRDATLKAPLWEDVSRKLSEFGYKRSAKKCKEKFENVQKYYKRTKESRGGRQ--HGKAYKFFSQLEA 139
                     8*********************************************************************85..5556******985 PP
2trihelix107.58.9e-34444528186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k evlaLi++r+ +e +++++  k+plWee+s++m++ g+ rs+k+Ckekwen+nk+ykk+keg+kkr +e+ +tcpyf++l+
  XP_010542309.1 444 RWPKAEVLALINLRSGLEPQYQEAGPKGPLWEEISAAMQRMGYCRSAKRCKEKWENINKYYKKVKEGNKKR-PEDAKTCPYFHHLD 528
                     8*********************************************************************8.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9848112IPR017877Myb-like domain
SMARTSM007170.01952114IPR001005SANT/Myb domain
PfamPF138376.7E-2154140No hitNo description
CDDcd122032.43E-2554119No hitNo description
SMARTSM007170.14307503IPR001005SANT/Myb domain
PROSITE profilePS500906.806437501IPR017877Myb-like domain
CDDcd122031.68E-28443508No hitNo description
PfamPF138374.5E-23443529No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MEQGGGGGGG EVVEEASPIS SRPPANFEEL MRFSAAAEDG GGGVSGGGSS SSGNRWPREE  60
TLALLRIRSD MDSIFRDATL KAPLWEDVSR KLSEFGYKRS AKKCKEKFEN VQKYYKRTKE  120
SRGGRQHGKA YKFFSQLEAL NTTAGTSNAA AAATATKVST LDVAPLSVAN PILTPFSTSA  180
AGVPSSSPFS VFPPPPPASF ASIPITPTPP PASANITAAG VSFSSHSSST ASGMGSDDDD  240
DDDDEMDVDV ANVAGPSSRK RKRGHRQGGK MMEFFEGLVK QVLQKQAAMQ RSFLDALEKT  300
EQERTGREEA WRRQEMARLA REHELMAQDR AASASRDAAI LSLIQKITGQ SIQLPPPSAT  360
PPQPPPPPPP PPAPPLQKIQ HTHHHRQRSH KAAETSNIQS QSQPIMAIPQ QQIPPRPPPQ  420
QQQPEKQHDQ MVGGSGSSEP ASSRWPKAEV LALINLRSGL EPQYQEAGPK GPLWEEISAA  480
MQRMGYCRSA KRCKEKWENI NKYYKKVKEG NKKRPEDAKT CPYFHHLDTL YRNKVLGGSS  540
TSGLQLHRPD QDQILTPKES AEASPEGVNV QPLGSASSSG DRNQEHMEKR PEEGAFREGG  600
ETEKKTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010542309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542309.10.0PREDICTED: trihelix transcription factor GTL1 isoform X2
TrEMBLA0A397Y2Y60.0A0A397Y2Y6_BRACM; Uncharacterized protein
TrEMBLA0A397Y8400.0A0A397Y840_BRACM; Uncharacterized protein
TrEMBLM4FFY60.0M4FFY6_BRARP; Uncharacterized protein
STRINGXP_010542301.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.19e-61GT-2-like 1