PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010542163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 25195.6 Da PI: 7.7299 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.7 | 2.8e-15 | 100 | 147 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h E++RRd+iN+++++L ++ P++ +Kl+Ka++ e+A+e+I++Lq XP_010542163.1 100 RSHASSEKKRRDKINEKYHNLEQITPHS-----GKLDKATTIELATEHIRELQ 147 68999**********************9.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.939 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-15 | 98 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-12 | 100 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-13 | 100 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.49E-12 | 100 | 149 | No hit | No description |
SMART | SM00353 | 3.5E-12 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNMNTNTCQS SKGVVNFANW SEVLASIVSP GFGSNPLQEV VDASTAEFSG PLNPPYPINI 60 NLSPQPLIEG TEPRKEKAKW KDVGLGTKKT LGKKTATAAR SHASSEKKRR DKINEKYHNL 120 EQITPHSGKL DKATTIELAT EHIRELQRQK AEYLEMYPHL KPIMCMSPRL FNAMIPFMMP 180 PMPHMMPYNG QGQGFGSVPP SMSQNGKPFY ADQDHEGETS DHNQED |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | KKRRDK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010542163.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010542162.1 | 1e-171 | PREDICTED: transcription factor PIF1-like | ||||
Refseq | XP_010542163.1 | 1e-171 | PREDICTED: transcription factor PIF1-like | ||||
STRING | XP_010542162.1 | 1e-170 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67110.1 | 3e-09 | bHLH family protein |