PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541983.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 303aa    MW: 34223.2 Da    PI: 8.9244
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.5e-2581124144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  XP_010541983.1  81 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 124
                     79***************************************987 PP
2QLQ58.71.7e-20742237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +FT +Q+++L++Q+ ++Ky++a++PvPp+Ll++i++
  XP_010541983.1  7 PFTESQWEELEHQAVIFKYIVAGVPVPPDLLFPIRR 42
                    9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-12642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.7E-15741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.516742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.00381125IPR014977WRC domain
PfamPF088799.7E-2182124IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MATTRVPFTE SQWEELEHQA VIFKYIVAGV PVPPDLLFPI RRTLISSSSS SLHLSSKFFS  60
HASTPHFSWN VYDMGFGRKM DPEPGRCRRT DGKKWRCSKE AYPDSKYCER HMHRGKNRSR  120
KPVEFSITSS SSSSVSATSS TFSFNNLKDT ANLPSLCLNT APLSRPANDD PRGRRRGVYM  180
DDFFSTEPSG SIRSFSGSSM VDGSRGFTPL AASSYFQKHR NNNYYSVGGA AKDEKPNHHC  240
FILGTDIAAR ETPLMLGKKM KQGEDHEVEE EEEEEQQRNK RVHRFLDEWP SSNTSSVSTS  300
LII
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00263DAPTransfer from AT2G06200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541983.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700701e-39KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541983.10.0PREDICTED: growth-regulating factor 6
SwissprotQ9ZQ121e-81GRF6_ARATH; Growth-regulating factor 6
TrEMBLA0A178VWJ63e-79A0A178VWJ6_ARATH; GRF6
TrEMBLA0A1J3F6404e-79A0A1J3F640_NOCCA; Growth-regulating factor 6 (Fragment)
STRINGXP_010541983.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141011821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G06200.14e-71growth-regulating factor 6
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]