PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541788.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 269aa    MW: 30348.5 Da    PI: 8.0486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.6e-07140161223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  XP_010541788.1 140 FCEICGKGFKRDANLRMHMRAH 161
                     6*******************99 PP
2zf-C2H211.90.00071232255123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     ++C+ C  ksFs   +Lk+H++ +
  XP_010541788.1 232 FPCHRCQkKSFSVLADLKSHQKHC 255
                     89*******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.77E-6136162No hitNo description
PROSITE profilePS5015712.133139166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.9E-6139161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0015139161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141161IPR007087Zinc finger, C2H2
SMARTSM0035576194227IPR015880Zinc finger, C2H2-like
SMARTSM0035538232254IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MANPSETYDT SPEFSVTGDY SGFCDPLRRL DTVRMRMDSL QSFLAETVNG NIILRRDQMD  60
VISSEISAAI EQVVVNGSAL LSCLQQPPPP PEAPAMPPGQ DPSHVFRIPN PSEKQGHENL  120
DDYDVIELDA VEILAEHVHF CEICGKGFKR DANLRMHMRA HGDQYKTTEA LSKPRTPTEV  180
LPHDSTAGHR KILFSCPHEG CNRNQRHKRF RPLKSVICVR NHFKRSHCPK LFPCHRCQKK  240
SFSVLADLKS HQKHCGEPTA ASTARWRCS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541788.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523325.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
RefseqXP_010541788.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like, partial
SwissprotQ0WT244e-57STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A2C9UW639e-98A0A2C9UW63_MANES; Uncharacterized protein
STRINGXP_010523325.10.0(Tarenaya hassleriana)
STRINGXP_010541788.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16077813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-59C2H2 family protein