PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541771.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 471aa    MW: 54184.3 Da    PI: 10.0809
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541771.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07270332243
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksr 43 
                      +r+++eEdel + av+++  +                      +Wk Ia+ ++  Rt+ ++  r
   XP_010541771.1 270 KRFSKEEDELVKAAVQEYIDNhglaeeglnmvmkcksipkvknCWKEIAAALP-WRTRSSVYYR 332
                      69*****************99********************************.***9988665 PP
2Myb_DNA-binding22.23.4e-07343376238
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                       +WT+e  el ++  +++G++ Wkt a+ mgk   + 
   XP_010541771.1 343 RSWTPEQLELVKNFAEKHGSD-WKTLAEVMGK--HRW 376
                      68*******************.********94..344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.6E-6268339IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-7270332IPR009057Homeodomain-like
PROSITE profilePS500905.053271337IPR017877Myb-like domain
CDDcd001670.00599271334No hitNo description
SMARTSM007170.006341388IPR001005SANT/Myb domain
PROSITE profilePS500906.214342386IPR017877Myb-like domain
SuperFamilySSF466893.43E-7342403IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.6E-6344395IPR009057Homeodomain-like
PfamPF139212.3E-10345403No hitNo description
PROSITE profilePS500907.712387455IPR017877Myb-like domain
SuperFamilySSF466895.24E-5390457IPR009057Homeodomain-like
SMARTSM007171.4391457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5396456IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MARYKMQGVG EESAKEKKRK AELEDSGSDG CLSVKKTKKR KKKTHKVEIG DEVCGMDETA  60
TGDEGLVEAD VENKPGRLDG TCIEKDVKST EDSSKKKKRG KNKTREDSSM RKKKKKKDKK  120
KVSDIEASES SKKDKTSEAD QRDDTPVEST DGCSGVTSRK KREKKRNSDL GADQSLENSD  180
KERKKKRKRK HNDESGAENN TLETERSAKK KKKKKQEQTK NAEPETPSSS KSAKRVTFSD  240
QVDMFPLSDG GVSEDEFKED EGNVELMMGK RFSKEEDELV KAAVQEYIDN HGLAEEGLNM  300
VMKCKSIPKV KNCWKEIAAA LPWRTRSSVY YRAHILFEGD PKRSWTPEQL ELVKNFAEKH  360
GSDWKTLAEV MGKHRWHVKD AWRRIKFPNM NKIRWSREEY QTLFDLVNMD LRTKALQEKN  420
SKHGMLRDNI PWTAISEQLG TRTHSNCCIK WYRQLTSPMV TSWLRQLFKN T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKRKK
24044KKKTH
394101KKKKRGKN
496114KKRGKNKTREDSSMRKKKK
5100112KNKTREDSSMRKK
6109116MRKKKKKK
7110117RKKKKKKD
8111119KKKKKKDKK
9111120KKKKKKDKKK
10158163RKKREK
11163185KKRNSDLGADQSLENSDKERKKK
12184189KKRKRK
13208214KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541771.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058236.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A067L9S71e-108A0A067L9S7_JATCU; Uncharacterized protein
STRINGXP_010541771.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.12e-96MYB_related family protein