PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541656.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 338aa    MW: 39403.6 Da    PI: 7.2934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.5e-09152190344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +WT+e  ell++ v+ +G++ Wkt a+ mg  + + q+++ w
   XP_010541656.1 152 SWTPEQLELLKNFVETHGSH-WKTLAEAMG--KHRAQVREAW 190
                      7*******************.********9..4555676655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-476140IPR009057Homeodomain-like
SMARTSM007175.2E-476147IPR001005SANT/Myb domain
PROSITE profilePS500903.89279140IPR017877Myb-like domain
PROSITE profilePS500906.876145194IPR017877Myb-like domain
SMARTSM007175.6E-5149196IPR001005SANT/Myb domain
SuperFamilySSF466895.04E-9151211IPR009057Homeodomain-like
CDDcd001670.00214152194No hitNo description
Gene3DG3DSA:1.10.10.605.0E-10152206IPR009057Homeodomain-like
PfamPF139211.8E-11153211No hitNo description
PROSITE profilePS500907.073195263IPR017877Myb-like domain
SMARTSM007171.9199265IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-6207282IPR009057Homeodomain-like
SuperFamilySSF466892.42E-6243320IPR009057Homeodomain-like
PROSITE profilePS500907.526265318IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGADQNTENS NEGMKKKRKK KHDARKKKQE ETKNAEHEIP TSSKSVKKVK FSDQVDVFPL  60
SDDGVSEDEE NVELVRGKRF SKEEDELVKA VVLRYIDKHG LGEEGLNMVM KCRSFPEVKN  120
CWKEIGAALP WRTQLSVYRR AHILFERDSE RSWTPEQLEL LKNFVETHGS HWKTLAEAMG  180
KHRAQVREAW KRIKFPKMNG ARWSSEEYQT LFDLVNIDLR TKALQEKKSK HGMLRDNIPW  240
TAISEQLGTR YHSSCCRKWY NQLTSPMVAE GIWDNSDDYR LLDELTELDA ACMEDVDWDD  300
LLENRSGELC RKRWDQMVRH IGVPGTKSFS DQVEILVG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320MKKKRKKK
21420KKKRKKK
31426KKKRKKKHDARKK
41427KKKRKKKHDARKKK
51519KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541656.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019058236.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A067L9S71e-140A0A067L9S7_JATCU; Uncharacterized protein
STRINGXP_010541656.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-129MYB_related family protein