PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541646.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 566aa    MW: 65120.2 Da    PI: 8.6106
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.2e-07277339243
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksr 43 
                      +r+++eEdel + av+++  +                      +Wk Ia+ ++  Rt+ ++  r
   XP_010541646.1 277 KRFSKEEDELVKAAVQEYIDNhglgeeglnmvmkcksipkvknCWKEIAAALP-WRTRSSVYYR 339
                      69****************9999*******************************.***9988665 PP
2Myb_DNA-binding21.84.3e-07350383238
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 
                       +WT+e  el ++  +++G++ Wkt a+ mgk   + 
   XP_010541646.1 350 RSWTPEQLELVKNFAEKHGSD-WKTLAEVMGK--HRW 383
                      68*******************.********94..344 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.2E-6275346IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-6277339IPR009057Homeodomain-like
CDDcd001670.00619278341No hitNo description
PROSITE profilePS500905.053278344IPR017877Myb-like domain
SMARTSM007170.006348395IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-7349410IPR009057Homeodomain-like
PROSITE profilePS500906.214349393IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-5351405IPR009057Homeodomain-like
PfamPF139213.0E-10352410No hitNo description
PROSITE profilePS500907.712394462IPR017877Myb-like domain
SMARTSM007171.4398464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-6406481IPR009057Homeodomain-like
SuperFamilySSF466896.94E-7442517IPR009057Homeodomain-like
PROSITE profilePS500907.724464517IPR017877Myb-like domain
SMARTSM0071731468519IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MEGAGEESAK EEKKRKAELD DSGCDGSLSV KKTKKKKKTH KVEIGDEVRG MVETTPIGEE  60
GLVETDGTCT EKDKNSTEDC SKKRKKKNDK NKISEDSSKR KKKKKKDKNK VSEDSSKRKK  120
KKKKDKNKVS DIEASESSKR DKTSEGEKRD DMPMENIDGC SGDTSRKKRE KKRNCDPRAD  180
HSSVNSDKEV KKKRKKKHND ESGAESNTVE TERSAKKKKK KKQEQTKNAE PETPSSSKSA  240
KRVTFSDQVD MFPLSDGGVS EDEFKEDEGN VELMMGKRFS KEEDELVKAA VQEYIDNHGL  300
GEEGLNMVMK CKSIPKVKNC WKEIAAALPW RTRSSVYYRA HILFEGDPKR SWTPEQLELV  360
KNFAEKHGSD WKTLAEVMGK HRWHVKDAWR RIKFPNMNKI RWSREEYQTL FDLVNMDLRT  420
KALQEKNSKH GMLRDNIPWT AISEQLGTRT HSNCCIKWYR QLTSPMVAEG IWDNSDDYLL  480
LDELMKLDAA CMEDVDWDSL LENRTGELCR KRWNQMVLHI GVPGSKSFSD QVEILADRYC  540
PDLAEDRAAF DQRPYDDDKD DDDDAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKKTH
282104KRKKKNDKNKISEDSSKRKKKKK
3103121KKKDKNKVSEDSSKRKKKK
4103123KKKDKNKVSEDSSKRKKKKKK
5116124KRKKKKKKD
6117124RKKKKKKD
7165170RKKREK
8191195KKRKK
9215221KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541646.10.0PREDICTED: RNA polymerase I termination factor-like
RefseqXP_019058259.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A1J3FAK81e-157A0A1J3FAK8_NOCCA; Transcription termination factor 1
STRINGXP_010541646.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-153MYB_related family protein