PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010541453.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 595aa    MW: 65165.9 Da    PI: 5.2894
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010541453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-06242262526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G+C +Gd+C +aHg
  XP_010541453.1 242 PCPEFRK-GYCCRGDSCEYAHG 262
                     8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.2E-1415163IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.87E-1354137IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.69857166IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0075787IPR002110Ankyrin repeat
PfamPF127964.1E-857125IPR020683Ankyrin repeat-containing domain
CDDcd002041.04E-1259155No hitNo description
PROSITE profilePS5008810.47292127IPR002110Ankyrin repeat
SMARTSM002480.01892124IPR002110Ankyrin repeat
SMARTSM003560.0015237263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3237264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4269300IPR000571Zinc finger, CCCH-type
SMARTSM0035624272295IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.718272296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGEAELPHLE LSLLLELSAC NDLNGFISLL EQEGLDNIDR SSSWYGRRIG SREMGFDART  60
PLMIASLFGS KEMVDYIIRS GRVDINRSCG SDAATALHCA VSGFSANSPD VVSLLLNAGA  120
DANSPDANGN KPVDVIFPSL NPVFSSRKKI LERLLNGGHD LMELEDRDEQ REASEKKEYP  180
VDPTLPDINS GIYGTDEFRM YAFKIKPCSR AYSHDWTECP FVHPGENARR RDPRKYQYSC  240
VPCPEFRKGY CCRGDSCEYA HGIFECWLHP SQYRTRLCKD EMNCKRRVCF FAHKPEELRP  300
LYPSTGSGVP SPRSSFSSCN SAYSFDNGPI SPLGFGSSTT PPLSPNTVPS PIGGKTWVNF  360
PNIVPPTLQL PRSRLKSTIN AKEIDFSDAI LGLSSPTPWN TTAMSSASSP LSGDIKATSL  420
NKLAGGTNQT SLSDVFGPDD TSGLQIRRSS AFNPQLYSSY ATSNSLTTSP IGAKSSSQRD  480
LPASGEDAFA KRSQSFMDLS CHSAIPSAIS TCMDDWGSPD GKLDWSVHGD DMQKFGRSAS  540
FGFRVGGGTR QLAEPVGLDE PDVSWVDPLV KEPSEMRLGR VWMEQSFMET EQSVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010541453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541453.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
RefseqXP_010541454.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
RefseqXP_019058247.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD7MQF90.0D7MQF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010541453.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein