PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010541441.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 251aa MW: 27903.3 Da PI: 9.1603 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.7e-14 | 136 | 180 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r +Rt+ q+ s+ qky XP_010541441.1 136 PWTEEEHKLFLMGLKKYGKGDWRNISRNYVITRTPTQVASHAQKY 180 8*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.196 | 26 | 81 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-7 | 27 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.52E-6 | 30 | 76 | No hit | No description |
SuperFamily | SSF46689 | 2.31E-10 | 30 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-12 | 128 | 185 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.604 | 129 | 185 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.25E-17 | 131 | 184 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-17 | 132 | 184 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.7E-13 | 133 | 183 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-13 | 136 | 180 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.47E-11 | 136 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MEILRPTSHV TGGNWLRPEE TAKNSSAGAT WTAAENKAFE NALAVYDEDS PDRWQKVAAM 60 IPGKTVSDVI KQYTELEADV SNIEAGLVPV PGYIMPSPQF TLDWTAAAGY KELKAMGNKR 120 PTAARPPEHE RKKGVPWTEE EHKLFLMGLK KYGKGDWRNI SRNYVITRTP TQVASHAQKY 180 FIRQLSGGKD KRRASIHDIT TFNLDDDEAH VKSSVTVNSP ALIIPWSNSS SSSNGQSFNS 240 TLSFHSSYPH I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-18 | 22 | 93 | 2 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010541441.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010541441.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-97 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M4CEH9 | 1e-113 | M4CEH9_BRARP; Uncharacterized protein | ||||
STRING | XP_010541440.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-115 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|