PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010541161.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 158aa MW: 18422.8 Da PI: 5.3705

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010541161.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.3	3.1e-11	2	41	11	50
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +tfskRr+gi KK +EL C+aev ++fs+ + +++s XP_010541161.1 2 TTFSKRRAGIYKKLNELIFTCNAEVGFLVFSKAETPFTFS 41 9********************************9999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	1.9E-13	1	40	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.563	1	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-15	2	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0011	2	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MTTFSKRRAG IYKKLNELIF TCNAEVGFLV FSKAETPFTF SHTSMESVFD KSMNPIRRKE 60 KDSTDSLVDA YKRERINHMN EEYEKVLEAI EEEKDRTQVL EKVSEEREIK KYWWKAPVQE 120 LDVNETQQMH DAFVELHAGL CDEIFVRLLH AGAANPSG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010541161.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010541161.1	1e-116	PREDICTED: agamous-like MADS-box protein AGL61
STRING	XP_010541161.1	1e-115	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04100.1	6e-38	AGAMOUS-like 57