PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010541113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | HB-PHD | ||||||||
Protein Properties | Length: 671aa MW: 75783.6 Da PI: 7.2615 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.3e-10 | 470 | 509 | 13 | 52 |
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 eL ++F +n ps++ r L+k+l+L+ ++V+ WF+N R XP_010541113.1 470 VELRKVFTENELPSKSVRDNLSKELDLEPDKVSEWFKNAR 509 58************************************99 PP | |||||||
2 | PHD | 40.4 | 6.6e-14 | 198 | 252 | 1 | 50 |
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C++ ++ +++++lCd +C+++fH+kCl+++le+e++p g +w+C+ C + XP_010541113.1 198 FCAKCSSREAflDNDIILCDgTCNRAFHQKCLEPPLETESIPPGdqSWFCKLCIC 252 6999*9955556********56********************9999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.86E-14 | 190 | 256 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 6.6E-12 | 194 | 253 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.87 | 196 | 253 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 3.6E-11 | 198 | 252 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 2.0E-9 | 198 | 251 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 3.58E-31 | 198 | 250 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 199 | 250 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00389 | 2.1E-5 | 458 | 519 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-7 | 469 | 512 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.9E-7 | 470 | 509 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.41E-7 | 471 | 519 | No hit | No description |
PROSITE profile | PS50071 | 11.451 | 471 | 515 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 471 | 520 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MQEGEIREQI DREPEKFSIG ETGSMLSAPF AKAGRKIANR RKNKQKRKTN AEKSGSISSR 60 KKASGAAFSS EKKSSRVHSK DADGEGKAKK ARKRKQKRQR GKVEPDEGLR LQRRTRYLLI 120 KMKLEQNLID AYSGEGWKGQ SREKIRPDKE LERARKQILK CKLGIRDAIH ELDMLSSVGS 180 IEEKVIAPDG SVHHEHIFCA KCSSREAFLD NDIILCDGTC NRAFHQKCLE PPLETESIPP 240 GDQSWFCKLC ICKMEIIDSM NAHIGTHFPV DSNWKDIFKE EAGHPNGSDG QLKNGEDWPS 300 DDSEDDDYDP EMREQGSDMS GVGSGGDDGE SISTSLSWSS GGVALSSGSG RWGLESDNIS 360 HAVGHRVDSG ETSNEDIVCG PRQRRAVDYR KLYDEMFGKD ALLHEQFSED EDWGPKHKRR 420 RKKESDAAST LVTLFESNEK DPNVETTMER ERLSADIKEK PASRLPRDAV ELRKVFTENE 480 LPSKSVRDNL SKELDLEPDK VSEWFKNARF MAMKSRKTES TKPAHGSTVL SEGPEPGAIH 540 EKHEETNEPR NTFVETVSYG SKDLENTSLS NRQKSSEQVA GQVGVDISLK KHTEEKNREG 600 KTTEHNQEFE TEMERLCRTQ NKIQDMKSRL SRFRRQRGRK KLGKSSCLLE ENSIVYVPIA 660 EIKEKELDAA V |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 95 | KKARKRKQ |
2 | 94 | 99 | KQKRQR |
3 | 418 | 423 | RRRKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010541113.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010541113.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein isoform X2 | ||||
Swissprot | P48785 | 0.0 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | V4MG34 | 0.0 | V4MG34_EUTSA; Uncharacterized protein | ||||
STRING | XP_010541111.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 0.0 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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