PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010540685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 32988 Da PI: 8.3528 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.6 | 7.8e-19 | 15 | 115 | 2 | 86 |
trihelix 2 WtkqevlaLiearr...............emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 Wt +e+++Liea++ e++ +rgk ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykki+e e++ ++ ss + + XP_010540685.1 15 WTVSETMVLIEAKKmdddrrlrrsiglsaAEEHDGGRGKPAELRWKWIEDYCWSKGCLRSQNQCNDKWDNLMRDYKKIRELERRTvEESSSASAS 109 **************8888888877777777777777888********************************************994456666777 PP trihelix 81 yfdqle 86 + ++e XP_010540685.1 110 SYWKME 115 888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.876 | 7 | 86 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 2.3E-13 | 14 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MTDGVAMREY RKGNWTVSET MVLIEAKKMD DDRRLRRSIG LSAAEEHDGG RGKPAELRWK 60 WIEDYCWSKG CLRSQNQCND KWDNLMRDYK KIRELERRTV EESSSASASS YWKMEKSERK 120 ERNLPSNMLS EIYYALVEVV GKKGLSSGSG DGGGVSDQIP GFLHQSPTVP LPPPLSFHAQ 180 PILPTVDTSS PAKRRRRSEA EAGPSGDGGG APVTEESGGS DAVGEAISKS ASVIADAIRA 240 CEERQDKRHR ETVNFKERML KIEESKAEVN RQSMNGRKNP EIVQDFIRCT CRYI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010540685.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010540685.1 | 0.0 | PREDICTED: uncharacterized protein LOC104814367 isoform X2 | ||||
TrEMBL | A0A087HS01 | 2e-97 | A0A087HS01_ARAAL; Uncharacterized protein | ||||
STRING | XP_010540683.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 3e-82 | Trihelix family protein |