PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010540683.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 308aa MW: 34200.2 Da PI: 7.6111

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010540683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.5	8.6e-19	15	115	2	86
trihelix 2 WtkqevlaLiearr...............emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 Wt +e+++Liea++ e++ +rgk ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykki+e e++ ++ ss + + XP_010540683.1 15 WTVSETMVLIEAKKmdddrrlrrsiglsaAEEHDGGRGKPAELRWKWIEDYCWSKGCLRSQNQCNDKWDNLMRDYKKIRELERRTvEESSSASAS 109 ************8888888877777777777777888******************************************994456666777 PP trihelix 81 yfdqle 86 + ++e XP_010540683.1 110 SYWKME 115 888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.876	7	86	IPR017877	Myb-like domain
Pfam	PF13837	2.6E-13	14	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MTDGVAMREY RKGNWTVSET MVLIEAKKMD DDRRLRRSIG LSAAEEHDGG RGKPAELRWK 60 WIEDYCWSKG CLRSQNQCND KWDNLMRDYK KIRELERRTV EESSSASASS YWKMEKSERK 120 ERNLPSNMLS EIYYALVEVV GKKGLSSGSG DGGGVSDQIP GFLHQSPTVP LPPPLSFHAQ 180 PILPTVDTSS PAKRRRRSEA EAGPSGDGGG APVTEESGGS DAVGEAISKS ASVIADAIRA 240 CEERQDKRHR ETVNFKERML KIEESKAEVN RQSMNGLVDA IDKLANSVFA LASSHHYQHN 300 NQHQGGPP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010540683.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010540683.1	0.0	PREDICTED: trihelix transcription factor ASR3 isoform X1
Refseq	XP_010540684.1	0.0	PREDICTED: trihelix transcription factor ASR3 isoform X1
TrEMBL	A0A087HS01	1e-113	A0A087HS01_ARAAL; Uncharacterized protein
STRING	XP_010540683.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-87	Trihelix family protein