PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540454.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 362aa    MW: 40446.7 Da    PI: 6.5147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-20180279299
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k+l++sdv+++gr+vlpk+ ae++   ++ +e+++++++d  s++ W++k+++  ++ks++yvl+ ++ eFvk++gL+ gD+++++  ++++++
  XP_010540454.1 180 VKELKNSDVGALGRIVLPKREAEANlpTLSDKEGIKIVMRDaDSNQAWSFKYKFwsNNKSRMYVLE-NTGEFVKQHGLEMGDSFTIH--EDESKN 271
                     699************************66666899******555599*****99888888889999.********************..668888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+ +++++
  XP_010540454.1 272 LYYSIRKA 279
                     89888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-27177291IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-22178273No hitNo description
SMARTSM010191.3E-20179280IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757179280IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-21179278IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-17180279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MENFSSSSPN TPLFSVHDHS SCQNSNLQQF MMSPNPYEYS YAFQGGQVDQ QTEFHSFPNA  60
NSAFPHISMP IQQNGCEPVV PTPSSLVNSG GLGQGLGGFL DPQKTKIARI KRKLARQRTL  120
SLSRNNSSSS SSSNNSNSNH SSNESDSRRQ VTFKGHPHNF SQGDQFRFCG LNNKLRVLLV  180
KELKNSDVGA LGRIVLPKRE AEANLPTLSD KEGIKIVMRD ADSNQAWSFK YKFWSNNKSR  240
MYVLENTGEF VKQHGLEMGD SFTIHEDESK NLYYSIRKAE KPKEATENAK EEEMIETTGE  300
YTPRDEDEAS LALLIEQLKD KEQQLDMSLS AIHDGDPSRA AHVTDGLGAS TQFHSYATSF  360
PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A7e-541722766110B3 domain-containing transcription factor LEC2
6j9c_D7e-541722766110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540454.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540454.10.0PREDICTED: B3 domain-containing transcription factor LEC2 isoform X2
TrEMBLA0A087HRE24e-78A0A087HRE2_ARAAL; Uncharacterized protein
STRINGXP_010540453.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.16e-63B3 family protein