PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540453.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 363aa    MW: 40574.9 Da    PI: 6.6531
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-20181280299
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     +k+l++sdv+++gr+vlpk+ ae++   ++ +e+++++++d  s++ W++k+++  ++ks++yvl+ ++ eFvk++gL+ gD+++++  ++++++
  XP_010540453.1 181 VKELKNSDVGALGRIVLPKREAEANlpTLSDKEGIKIVMRDaDSNQAWSFKYKFwsNNKSRMYVLE-NTGEFVKQHGLEMGDSFTIH--EDESKN 272
                     699************************66666899******555599*****99888888889999.********************..668888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+ +++++
  XP_010540453.1 273 LYYSIRKA 280
                     89888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-27176292IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-22179274No hitNo description
SMARTSM010191.3E-20180281IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757180281IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-21180279IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-17181280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MENFSSSSPN TPLFSVHDHS SCQNSNLQQF MMSPNPYEYS YAFQGGQVDQ QTEFHSFPNA  60
NSAFPHISMP IQQNGCEPVV PTPSSLVNSG GLGQGLGGFL DPQKTKIARI KRKLARQRTL  120
SLSRNNSSSS SSSNNSNSNH SSNESDSRRQ VTFKGHPHNF SQGDQFRFCG LNNKKLRVLL  180
VKELKNSDVG ALGRIVLPKR EAEANLPTLS DKEGIKIVMR DADSNQAWSF KYKFWSNNKS  240
RMYVLENTGE FVKQHGLEMG DSFTIHEDES KNLYYSIRKA EKPKEATENA KEEEMIETTG  300
EYTPRDEDEA SLALLIEQLK DKEQQLDMSL SAIHDGDPSR AAHVTDGLGA STQFHSYATS  360
FPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A6e-551712774110B3 domain-containing transcription factor LEC2
6j9c_D6e-551712774110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540453.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540453.10.0PREDICTED: B3 domain-containing transcription factor LEC2 isoform X1
TrEMBLA0A087HRE21e-80A0A087HRE2_ARAAL; Uncharacterized protein
STRINGXP_010540453.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.19e-55B3 family protein