PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010540363.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 285aa    MW: 31196 Da    PI: 6.1671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010540363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.11.6e-27179239259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y+WrKYGqKe+ g++fpr+YYrCt++   +Cp++k+v+r ++dp ++ +tY+g+H+++
  XP_010540363.1 179 DDNYTWRKYGQKEILGAKFPRAYYRCTHQklyNCPATKQVQRLDHDPFTFRVTYRGSHTCH 239
                     8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-27173239IPR003657WRKY domain
SuperFamilySSF1182902.09E-25175240IPR003657WRKY domain
SMARTSM007741.8E-36178240IPR003657WRKY domain
PROSITE profilePS5081120.587179241IPR003657WRKY domain
PfamPF031061.8E-25179239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEEIMPMIFH GFELVKDLES SLPEKPPESL SDSLDSISKT FGQANDRLKN LMRNSGVAPD  60
RPEPAMPVLS GSDQMLLKID SDLLQEYWSR PGASQSMDAV IQTQLTEEAA APARVNAPAG  120
SAATEAEVSV QLRRTEPTDS GGGSGSSTPR PRRRNKEDGT QQTVLVAAPR MGNTEVPPDD  180
NYTWRKYGQK EILGAKFPRA YYRCTHQKLY NCPATKQVQR LDHDPFTFRV TYRGSHTCHI  240
SPTAPVSSAA EVADMATAMF SFPGGGDMGL IFPAHGDCQG HNRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20179238968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010540363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540363.10.0PREDICTED: WRKY transcription factor 55
SwissprotQ9SHB59e-98WRK55_ARATH; WRKY transcription factor 55
TrEMBLD7LFT81e-100D7LFT8_ARALL; WRKY DNA-binding protein 55
STRINGXP_010540363.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-76WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]