PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010539947.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 27365.7 Da PI: 9.7596 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 8.9e-15 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I+r + k+Rt+ q+ s+ qky XP_010539947.1 97 PWTEEEHKLFLLGLQKVGKGDWKGISRNFVKTRTPTQVASHAQKY 141 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.951 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-17 | 92 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-17 | 93 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-9 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-11 | 97 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.71E-10 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 1.1E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAAGSSSSSE TGGGGVRKEI MLFGVRVVVD PMRKCVSLNN LSEYEQPEEI PKKIGGGDGD 60 GEGKNKADFA VGYASADEAV PISSSSGGNR ERKRGIPWTE EEHKLFLLGL QKVGKGDWKG 120 ISRNFVKTRT PTQVASHAQK YFLRRSNFNR RRRRSSLFDI TTETVTGMAM EEDHVQVSHP 180 KDTQPNFVHL VSSTLQAPSG FNLNPAVNSS PLSLSLSLAA PCPKDQQSAN CSAFRTTMPS 240 FSSRDSNSVI GVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010539947.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010539946.1 | 0.0 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 2e-57 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | E4MX29 | 2e-87 | E4MX29_EUTHA; mRNA, clone: RTFL01-16-O16 | ||||
TrEMBL | V4KXY1 | 2e-87 | V4KXY1_EUTSA; Uncharacterized protein | ||||
STRING | XP_010539947.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 7e-63 | MYB_related family protein |
Publications ? help Back to Top | |||
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