PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539946.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 253aa MW: 27365.7 Da PI: 9.7596

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539946.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.4	8.9e-15	97	141	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+Wk I+r + k+Rt+ q+ s+ qky XP_010539946.1 97 PWTEEEHKLFLLGLQKVGKGDWKGISRNFVKTRTPTQVASHAQKY 141 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.951	90	146	IPR017930	Myb domain
SuperFamily	SSF46689	1.15E-17	92	147	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-17	93	144	IPR006447	Myb domain, plants
SMART	SM00717	1.0E-9	94	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-11	97	141	IPR009057	Homeodomain-like
CDD	cd00167	5.71E-10	97	142	No hit	No description
Pfam	PF00249	1.1E-11	97	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MAAGSSSSSE TGGGGVRKEI MLFGVRVVVD PMRKCVSLNN LSEYEQPEEI PKKIGGGDGD 60 GEGKNKADFA VGYASADEAV PISSSSGGNR ERKRGIPWTE EEHKLFLLGL QKVGKGDWKG 120 ISRNFVKTRT PTQVASHAQK YFLRRSNFNR RRRRSSLFDI TTETVTGMAM EEDHVQVSHP 180 KDTQPNFVHL VSSTLQAPSG FNLNPAVNSS PLSLSLSLAA PCPKDQQSAN CSAFRTTMPS 240 FSSRDSNSVI GVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539946.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539946.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-57	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	E4MX29	2e-87	E4MX29_EUTHA; mRNA, clone: RTFL01-16-O16
TrEMBL	V4KXY1	2e-87	V4KXY1_EUTSA; Uncharacterized protein
STRING	XP_010539947.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	7e-63	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]