PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539900.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 271aa    MW: 30007.6 Da    PI: 8.6598
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1024.1e-3261116258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++vrY+eClkNhAas+Gg + DGCgEfmp  geegt++alkCaAC+CHRnFHR+ev+
  XP_010539900.1  61 KTVRYRECLKNHAASVGGSVQDGCGEFMPG-GEEGTIEALKCAACDCHRNFHRKEVD 116
                     689**************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
ProDomPD1257746.0E-2562116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.0E-3063115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.7E-3064115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.83765114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.47E-20202267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-30202268IPR009057Homeodomain-like
PROSITE profilePS500718.714204268IPR001356Homeobox domain
TIGRFAMsTIGR015653.0E-30206263IPR006455Homeodomain, ZF-HD class
CDDcd000860.0015207269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDIRSHDLIE RRAEGNNNDS SHNNYNGNNT SVSCTTQTLD HHYHRQKSPS SLSLPGSNVA  60
KTVRYRECLK NHAASVGGSV QDGCGEFMPG GEEGTIEALK CAACDCHRNF HRKEVDGGGG  120
NRPYGSSAAL RPPPAVGMSM MMSPLMVSPP ASFHHRKYGM VTPMSVAYGG GGAESSSEDL  180
NLYGQSSGEY GAAVGTQTQP PFSMTKKRFR TKFTSEQKER MMEFAEKLGW RMNKQDEEEL  240
ERFCAEIGVK RQVFKVWMHN NKNNVKKQQS M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-252052641675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539899.10.0PREDICTED: zinc-finger homeodomain protein 5 isoform X1
RefseqXP_010539900.10.0PREDICTED: zinc-finger homeodomain protein 5 isoform X2
SwissprotQ9FRL55e-97ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A0D3D0U31e-101A0A0D3D0U3_BRAOL; Uncharacterized protein
STRINGXP_010539899.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-86homeobox protein 33