PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539870.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

DBB

Protein Properties

Length: 329aa MW: 36356.8 Da PI: 7.134

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.2	5.3e-06	3	34	4	35
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 kC+ ++++e++ C ++ lC C H+ XP_010539870.1 3 IKCDVCNKEEASVLCIADEASLCSVCDHRVHH 34 58*************************99974 PP
2	zf-B_box	27.7	5.8e-09	53	90	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++ek++ lfC +++ lC+dC +H+ Ht XP_010539870.1 53 SPLCDICQEKRALLFCVQDRAILCKDCDAPIHEAneHT 90 689*****************************667776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.096	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	2.75E-4	3	34	No hit	No description
SMART	SM00336	1.9E-4	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.1E-13	51	98	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.826	51	98	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.5E-7	53	91	IPR000315	B-box-type zinc finger
CDD	cd00021	1.24E-8	54	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKIKCDVCNK EEASVLCIAD EASLCSVCDH RVHHANKLAS KHLRFSLLEP SSSPLCDICQ 60 EKRALLFCVQ DRAILCKDCD APIHEANEHT KKHDRFLLTG VKLSAESCPY KCTSDSPSSP 120 TKQDLSVPGS SISKPLIEKP APAQHSNSKI HSSSSAKPKP RVEKSAAARS KNCGDDAAAN 180 QSGCTSTISE YLIEMLPGWH VEDLLDSPVP PFGFYQNEDG VSPYMEAEFN NSSNSHISFG 240 SFPSENLGIR VPQIPQTLTS SYPNQYHSHD QNSNYTQIGS FKESVCSYVP TPNMKQQQGQ 300 NKRWLDDGVF TVPQITSPIH NNKKSRSFW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269\|PubMed:17965270, ECO:0000269\|PubMed:21070414}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539870.1	0.0	PREDICTED: B-box zinc finger protein 21-like
Swissprot	Q9LQZ7	1e-126	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	D7KSQ7	1e-126	D7KSQ7_ARALL; Zinc finger (B-box type) family protein
STRING	XP_010539870.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5400	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	1e-127	salt tolerance homolog2

Publications ? help Back to Top
Xu D, et al. BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60 [PMID:27325768] Xu DB, et al. The G-Protein β Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 in Arabidopsis. Mol Plant, 2017. 10(9): p. 1206-1223 [PMID:28827171] Xu D,Jiang Y,Li J,Holm M,Deng XW The B-Box Domain Protein BBX21 Promotes Photomorphogenesis. Plant Physiol., 2018. 176(3): p. 2365-2375 [PMID:29259103] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209] Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum. Plant Physiol., 2018. 177(1): p. 369-380 [PMID:29555784] Kang X, et al. HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture. Plant Cell Environ., 2018. 41(8): p. 1912-1925 [PMID:29748960]