PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010539734.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Trihelix

Protein Properties

Length: 434aa MW: 49661.2 Da PI: 6.7468

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010539734.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.3	6.4e-26	120	216	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d XP_010539734.1 120 KWTDKMVKLLITAVSYIGEDSAVDCggssrrkfavlQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLD 214 7*******************98888888999999********************************************5699998888877 PP trihelix 84 ql 85 + XP_010539734.1 215 VI 216 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-23	118	243	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MEGNFSQGGM VPGGPPYGGG FDLQGSIRVH HPNAMHHHQH NPNPRPDSSA RPSLHEGLPF 60 TMVAGHSCEQ NVSTSEYNKN ERGKGSMSDE DEPSFTEEGG GDGHNEVNKA KKGSPWQRVK 120 WTDKMVKLLI TAVSYIGEDS AVDCGGSSRR KFAVLQKKGK WKSVSKVMAE RSYHVSPQQC 180 EDKFNDLNKR YKKLNDMLGR GTSCQVVENP ALLDVIDYLS EKEKDDVRKI LSSKHLFYEE 240 MCSYHNGNRL HLPHDPSLQR SLQLALRSRD DHDNDDARKH HCEDHDDEDH DMEADDHDDC 300 EEHHSIQRDG RGIHHASLGV SLKRLKQAQN HEDGSGCPNP MNSQECSKGS LPESGRAAWL 360 QKQWIESRSL QLEEQKLQIQ AELLELEKQR FKWQRFSKKR DQELEKMRME NQRMKLENER 420 MALELKRREM GSDL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MEGNFSQGGM VPGGPPYGGG FDLQGSIRVH HPNAMHHHQH NPNPRPDSSA RPSLHEGLPF  60
TMVAGHSCEQ NVSTSEYNKN ERGKGSMSDE DEPSFTEEGG GDGHNEVNKA KKGSPWQRVK  120
WTDKMVKLLI TAVSYIGEDS AVDCGGSSRR KFAVLQKKGK WKSVSKVMAE RSYHVSPQQC  180
EDKFNDLNKR YKKLNDMLGR GTSCQVVENP ALLDVIDYLS EKEKDDVRKI LSSKHLFYEE  240
MCSYHNGNRL HLPHDPSLQR SLQLALRSRD DHDNDDARKH HCEDHDDEDH DMEADDHDDC  300
EEHHSIQRDG RGIHHASLGV SLKRLKQAQN HEDGSGCPNP MNSQECSKGS LPESGRAAWL  360
QKQWIESRSL QLEEQKLQIQ AELLELEKQR FKWQRFSKKR DQELEKMRME NQRMKLENER  420
MALELKRREM GSDL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010539734.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010539734.1	0.0	PREDICTED: uncharacterized protein LOC104813711
TrEMBL	A0A2K2BEQ0	0.0	A0A2K2BEQ0_POPTR; Uncharacterized protein
STRING	XP_010539734.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	0.0	sequence-specific DNA binding transcription factors