PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539732.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 554aa    MW: 63213.6 Da    PI: 8.3163
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.54.8e-2042118187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++ e+l L+++r+em++++r ++lk+plWe++s+        rs+k+Ckek+en+ k++k++ke+++++  ++ +t+++fd+lea
  XP_010539732.1  42 RWPRPETLSLLRIRSEMDSSFRHSSLKAPLWEQISR--------RSAKKCKEKFENVYKYHKRTKENRSGK--PEGKTYRFFDELEA 118
                     8*********************************95........9*********************99985..55568******985 PP
2trihelix93.42.3e-29365451187
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k e+ aLi++r +++ ++++ g +   lW e+s+ mr+ g++rs+k+Ckekwen+nk++kk++e++kkr + ss+tcpyf+ql+a
  XP_010539732.1 365 RWPKAEIEALIRLRADIGFNYQDnGTKGRSLWGEISAGMRKIGYNRSAKRCKEKWENINKYFKKVRESSKKR-PLSSKTCPYFHQLDA 451
                     8*********************83567799*****************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717153993IPR001005SANT/Myb domain
PfamPF138372.1E-1041118No hitNo description
CDDcd122037.64E-184198No hitNo description
PROSITE profilePS500905.1924291IPR017877Myb-like domain
PROSITE profilePS500907.979358423IPR017877Myb-like domain
SMARTSM007177.5E-5362425IPR001005SANT/Myb domain
CDDcd122031.88E-20364430No hitNo description
PfamPF138373.2E-21364452No hitNo description
Gene3DG3DSA:1.10.10.605.2E-4364422IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MLGDSGEALE SSAASASAGE EGKDVKLEDS GEIVTGGGGG KRWPRPETLS LLRIRSEMDS  60
SFRHSSLKAP LWEQISRRSA KKCKEKFENV YKYHKRTKEN RSGKPEGKTY RFFDELEAFE  120
TLRSYPPEPE SRPEKLSAPK IASLVPWISR SNPSSGTNAS PLRNDPSNTT NPTFFVKKQS  180
ITPFVMNHST ETVLGAGYKA DSNNFTTIVS SLNIFSSSMS SSTASEEEEE EKGKGSRKRR  240
KYWKGSFKKL AKDLMEKQDE MQKRFFETLD KREEERLAKE EEWRVQETAR INREYEILLH  300
ERSSSAVKDA AFISFLQKVS EQQHQQQKLP FACLNDQKHE KGTVEDTSKM SNGDSNYKLS  360
QSSSRWPKAE IEALIRLRAD IGFNYQDNGT KGRSLWGEIS AGMRKIGYNR SAKRCKEKWE  420
NINKYFKKVR ESSKKRPLSS KTCPYFHQLD AIYKEKNKTV GLPLMAATQQ QMLPLQVTCD  480
ESEKQKTLTV ATQQQSQVTF DESEKQEMGN EGDRIRMEET DSEEEEDEDN ETGGFEMVLN  540
RTCSPMDINN NVFA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539732.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539732.10.0PREDICTED: trihelix transcription factor GT-2 isoform X2
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A178W7Z20.0A0A178W7Z2_ARATH; GT2
STRINGXP_010539731.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-157Trihelix family protein