PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539731.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 562aa    MW: 64196.7 Da    PI: 8.5006
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539731.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.49.1e-2942126187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++ e+l L+++r+em++++r ++lk+plWe++s+km+e g++rs+k+Ckek+en+ k++k++ke+++++  ++ +t+++fd+lea
  XP_010539731.1  42 RWPRPETLSLLRIRSEMDSSFRHSSLKAPLWEQISRKMAEFGYRRSAKKCKEKFENVYKYHKRTKENRSGK--PEGKTYRFFDELEA 126
                     8*****************************************************************99985..55568******985 PP
2trihelix93.32.3e-29373459187
        trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k e+ aLi++r +++ ++++ g +   lW e+s+ mr+ g++rs+k+Ckekwen+nk++kk++e++kkr + ss+tcpyf+ql+a
  XP_010539731.1 373 RWPKAEIEALIRLRADIGFNYQDnGTKGRSLWGEISAGMRKIGYNRSAKRCKEKWENINKYFKKVRESSKKR-PLSSKTCPYFHQLDA 459
                     8*********************83567799*****************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1239101IPR001005SANT/Myb domain
CDDcd122031.59E-2441106No hitNo description
PfamPF138379.7E-2041126No hitNo description
PROSITE profilePS500906.7834299IPR017877Myb-like domain
PROSITE profilePS500907.979366431IPR017877Myb-like domain
SMARTSM007177.5E-5370433IPR001005SANT/Myb domain
CDDcd122032.03E-20372438No hitNo description
PfamPF138373.3E-21372460No hitNo description
Gene3DG3DSA:1.10.10.605.3E-4372430IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MLGDSGEALE SSAASASAGE EGKDVKLEDS GEIVTGGGGG KRWPRPETLS LLRIRSEMDS  60
SFRHSSLKAP LWEQISRKMA EFGYRRSAKK CKEKFENVYK YHKRTKENRS GKPEGKTYRF  120
FDELEAFETL RSYPPEPESR PEKLSAPKIA SLVPWISRSN PSSGTNASPL RNDPSNTTNP  180
TFFVKKQSIT PFVMNHSTET VLGAGYKADS NNFTTIVSSL NIFSSSMSSS TASEEEEEEK  240
GKGSRKRRKY WKGSFKKLAK DLMEKQDEMQ KRFFETLDKR EEERLAKEEE WRVQETARIN  300
REYEILLHER SSSAVKDAAF ISFLQKVSEQ QHQQQKLPFA CLNDQKHEKG TVEDTSKMSN  360
GDSNYKLSQS SSRWPKAEIE ALIRLRADIG FNYQDNGTKG RSLWGEISAG MRKIGYNRSA  420
KRCKEKWENI NKYFKKVRES SKKRPLSSKT CPYFHQLDAI YKEKNKTVGL PLMAATQQQM  480
LPLQVTCDES EKQKTLTVAT QQQSQVTFDE SEKQEMGNEG DRIRMEETDS EEEEDEDNET  540
GGFEMVLNRT CSPMDINNNV FA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539731.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539731.10.0PREDICTED: trihelix transcription factor GT-2 isoform X1
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A178W7Z20.0A0A178W7Z2_ARATH; GT2
STRINGXP_010539731.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-165Trihelix family protein