PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010539475.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARR-B
Protein Properties Length: 678aa    MW: 74591.5 Da    PI: 5.7387
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010539475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.95.5e-29210263155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W++eLH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_010539475.1 210 KPRVVWASELHQKFVAAVTQL-GPDKAVPKKILDLMNVEGLTRENVASHLQKYRL 263
                     79*******************.********************************8 PP
2Response_reg82.31.5e-27211291109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ l+++l + +y +v++++++++ale+l+e+   +Dl++ D+emp+mdG++ll+  + e ++lp+i+++ah++ + + + +  G
  XP_010539475.1  21 VLAVDDNPTCLRKLEELLLSCKY-HVTTTKEAKAALEMLREESnkFDLVISDVEMPDMDGFKLLELVALE-MNLPVIMLSAHSDYDHVMKGITHG 113
                     799********************.***************888888*******************988765.5*********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  +el++
  XP_010539475.1 114 ACDYLIKPVGLKELRN 129
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1541678IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.0E-3818157No hitNo description
SuperFamilySSF521723.27E-3418138IPR011006CheY-like superfamily
SMARTSM004481.7E-3319131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.28320135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2421130IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.27E-2822134No hitNo description
PROSITE profilePS5129412.379207266IPR017930Myb domain
SuperFamilySSF466891.43E-18208267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-30208268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24210263IPR006447Myb domain, plants
PfamPF002497.2E-7212262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MESAASAEEG RKEQFPVGMR VLAVDDNPTC LRKLEELLLS CKYHVTTTKE AKAALEMLRE  60
ESNKFDLVIS DVEMPDMDGF KLLELVALEM NLPVIMLSAH SDYDHVMKGI THGACDYLIK  120
PVGLKELRNI WQHVVRNNIQ PYARNNAVGP SRQLLPPPDA HQASKVNKKR KDTSQDNIDD  180
GDDEDNDSDG ENEGGEGSDH DMDESSSRKK PRVVWASELH QKFVAAVTQL GPDKAVPKKI  240
LDLMNVEGLT RENVASHLQK YRLYLKKMDE AHLHRHMSST AYGTKDPSCL HMAQLDGFKD  300
FHGLTATRQL PISTLLSRPH APIVTRLNSP TRSLINLQGI ASPSFVQPGH YQNSSNSTNM  360
SGKYHSPLLS GVQNVNSFQR TTPQLEPNLF LGSKGPAYVG DSKIIGDRSI CSGFLDSRAS  420
FGGSSSPSLA NASTNSLMLQ AKYQQPLHKI LSGNESSLLG APSDFSSLNF SMPGSSSFPN  480
HSGCSTGWQG NDKTPKFPLN SLQINHSFSR DDKLADNNFS GIAGNGPADI NSFIFAENHG  540
GEMQCQSHLN TSGQQNWEEQ RRDCIHVLNN SFGNMDGLVP ANEMVMDMIN AVGNKGLDGS  600
SVMSEIDGGV ILNREQANVG KPARLEPEMR KGYSLEQTKS ENGFINDQPD TFDDMMNEMM  660
KQDEPMAADF GIDSFHLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23206268163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010539475.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010539470.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_010539471.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_010539472.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_010539473.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_010539474.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_010539475.10.0PREDICTED: two-component response regulator ARR18-like
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLD7MPK50.0D7MPK5_ARALL; Two-component response regulator
STRINGXP_010539468.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18